sufforest / SolidBin
A genome binning method for contig binning, based on semi-supervised spectral clustering method.
☆13Updated 4 years ago
Alternatives and similar repositories for SolidBin:
Users that are interested in SolidBin are comparing it to the libraries listed below
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- Strain Resolution ON Graphs☆47Updated last year
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Updated 4 months ago
- ☆16Updated 4 years ago
- Tool for unsupervised contig binning from viral metagenomes☆16Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆17Updated 4 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆18Updated 2 years ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 4 months ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆33Updated 4 months ago
- ☆35Updated last year
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 11 months ago
- viralFlye pipeline☆18Updated 5 months ago
- ☆26Updated this week
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆40Updated 4 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated 3 years ago
- Improvement of metagenome-assembled genomes☆51Updated 4 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆49Updated 6 months ago
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- A placeholder for all my random scripts. Some scripts might eventually graduate and go to their own projects, so don't be surprised if a…☆17Updated 3 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆61Updated 4 months ago
- A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/pl…☆26Updated 7 months ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆23Updated 2 months ago
- ☆31Updated last year
- Estimate metagenomic coverage and sequence diversity☆47Updated 5 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆32Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆27Updated 2 weeks ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆19Updated last month