sufforest / SolidBinLinks
A genome binning method for contig binning, based on semi-supervised spectral clustering method.
☆13Updated 4 years ago
Alternatives and similar repositories for SolidBin
Users that are interested in SolidBin are comparing it to the libraries listed below
Sorting:
- An algorithm for clustering metagenomic sequences.☆37Updated 5 months ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆20Updated 3 months ago
- ☆32Updated 6 months ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 4 years ago
- ☆17Updated 3 years ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 11 months ago
- ☆34Updated last year
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Updated 6 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆65Updated 11 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- ☆56Updated last year
- ☆18Updated 4 years ago
- Hydrocarbon biodegradation gene annotation☆17Updated 3 years ago
- KEGG Module Evaluation Tool☆30Updated last year
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Prophage Activity Estimator☆26Updated last year
- Microbial agile accurate SNP Typer☆30Updated last year
- More scalable dereplication for metagenome assembled genomes☆67Updated last week
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆21Updated 11 months ago
- Automatic eukaryotic taxonomic classification☆29Updated 3 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆40Updated last year
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆31Updated 7 years ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆65Updated this week
- ☆59Updated last year
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Updated 3 years ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14Updated 2 years ago
- Phigaro is a scalable command-line tool for predicting phages and prophages☆52Updated last year