sufforest / SolidBinLinks
A genome binning method for contig binning, based on semi-supervised spectral clustering method.
β12Updated 5 years ago
Alternatives and similar repositories for SolidBin
Users that are interested in SolidBin are comparing it to the libraries listed below
Sorting:
- Tool for unsupervised contig binning from viral metagenomesβ17Updated 4 years ago
- π¦π§¬ Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphsβ68Updated last year
- Automated strain separation of low-complexity metagenomesβ52Updated 4 years ago
- Predict prokaryotic host for phage metagenomic sequencesβ53Updated last year
- β36Updated 2 years ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Compositionβ20Updated last year
- Strain Resolution ON Graphsβ50Updated 2 years ago
- Evaluating Nanopore-based bacterial variant callingβ21Updated 5 months ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.β23Updated 7 months ago
- β33Updated 3 months ago
- β―οΈπ§¬ Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphsβ37Updated 2 months ago
- Prophage Activity Estimatorβ30Updated last year
- Improving genome bins through the combination of different binning programsβ31Updated 2 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencingβ21Updated 2 years ago
- Phasing for metagenomics using PacBio long readsβ16Updated 4 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.β24Updated 6 months ago
- More scalable dereplication for metagenome assembled genomesβ75Updated last month
- β16Updated last year
- Set of utilities on sequences and BAM filesβ26Updated 4 years ago
- β18Updated 4 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016β¦β35Updated 2 years ago
- A toolbox for improving metagenome-assembled genomes.β62Updated 4 years ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact mapsβ14Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learningβ36Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes databaseβ43Updated 5 years ago
- β33Updated 4 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmenβ¦β20Updated 3 years ago
- Microbial Populations as Clusters Of Gene Transferβ45Updated 2 years ago
- De novo Extraction of Strains from MetAgeNomesβ71Updated 5 years ago
- Microbial agile accurate SNP Typerβ30Updated 2 years ago