sufforest / SolidBin
A genome binning method for contig binning, based on semi-supervised spectral clustering method.
☆13Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for SolidBin
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆19Updated 2 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆18Updated 2 years ago
- Tool for unsupervised contig binning from viral metagenomes☆15Updated 3 years ago
- ☆30Updated 11 months ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- ☆23Updated 9 months ago
- Pipeline to annotate sequences at different taxonomic levels using NCBI's taxonomy☆20Updated 11 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- ☆16Updated 8 months ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆33Updated last month
- ☆16Updated 4 years ago
- Set of utilities on sequences and BAM files☆25Updated 3 years ago
- Strain Resolution ON Graphs☆47Updated last year
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆28Updated 6 years ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 2 months ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 9 months ago
- Estimate metagenomic coverage and sequence diversity☆46Updated 3 months ago
- A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/pl…☆26Updated 5 months ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆11Updated 2 years ago
- ☆30Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆29Updated last year
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Updated 8 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆41Updated 4 months ago
- Prophage Activity Estimator☆26Updated 5 months ago
- viralFlye pipeline☆19Updated 3 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated this week
- GTDB => NCBI☆12Updated last week
- StrainEst - abundance estimation of strains☆21Updated 4 years ago
- KEGG Module Evaluation Tool☆26Updated last year
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆59Updated last month