songweizhi / Binning_refiner
Improving genome bins through the combination of different binning programs
☆31Updated last year
Related projects ⓘ
Alternatives and complementary repositories for Binning_refiner
- Estimate metagenomic coverage and sequence diversity☆46Updated 3 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆29Updated last year
- A tool for removing redundant genomes from a set of assemblies☆68Updated last year
- ☆24Updated 5 years ago
- Improvement of metagenome-assembled genomes☆49Updated 4 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- ☆28Updated last year
- Prophage Activity Estimator☆26Updated 5 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆25Updated last week
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆23Updated 6 years ago
- Order and orientation of complete bacterial genomes☆27Updated 11 months ago
- Taxonomic classification of viruses at Order and Family level☆18Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 3 weeks ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆40Updated 3 weeks ago
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- MAG Circularization Method☆33Updated 2 years ago
- ☆17Updated 2 months ago
- Gene-flank analysis tool☆26Updated 6 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆36Updated last month
- viralFlye pipeline☆19Updated 3 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆46Updated 4 months ago
- Strain Resolution ON Graphs☆47Updated last year
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- ☆51Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- ☆18Updated 2 years ago
- Recombination-free trees☆56Updated last year
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆39Updated 3 months ago