Metagenomic binning based on Hi-C data
☆30Oct 26, 2026Updated last week
Alternatives and similar repositories for metaTOR
Users that are interested in metaTOR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆25Jun 26, 2025Updated last year
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆44Apr 27, 2026Updated 6 months ago
- Analyzing Hi-C data in R with HiCExperiment objects☆16Oct 6, 2026Updated 3 weeks ago
- ☆21Oct 23, 2026Updated last week
- Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps☆71Sep 15, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Importing and manipulating Hi-C data in R☆13Oct 5, 2026Updated 3 weeks ago
- (check out instaGRAAL for a faster, updated program!) This program is from Marie-Nelly et al., Nature Communications, 2014 (High-qualit…☆15Nov 22, 2022Updated 3 years ago
- Read-pair simulation of 3C-based sequencing methodologies (HiC, Meta3C, DNase-HiC)☆21Jul 10, 2024Updated 2 years ago
- Rapid comparison and dereplication of genomes☆360Oct 9, 2026Updated 3 weeks ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Mar 17, 2025Updated last year
- ☆20Nov 17, 2022Updated 3 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆56Jul 3, 2024Updated 2 years ago
- SemiBin: metagenomics binning with self-supervised deep learning☆175Oct 13, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- DAS Tool☆178Oct 9, 2026Updated 3 weeks ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Dec 7, 2021Updated 4 years ago
- tyPPing and other methods for detecting phage-plasmids☆14Dec 18, 2025Updated 10 months ago
- Haplotype-aware genome assembly toolkit☆30Jan 8, 2020Updated 6 years ago
- A python library for predicting phage lifestyle based on genome sequence☆44Aug 9, 2023Updated 3 years ago
- DDBJ Fast Annotation and Submission Tool☆86Oct 23, 2026Updated last week
- The CRISPR assembler☆36May 13, 2021Updated 5 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 11 months ago
- Fast and exact ILP-based solvers for the Minimum Flow Decomposition problem, and variants of it.☆14Dec 4, 2025Updated 10 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Lightweight bioinformatics pipeline for microbial genome recovery☆18Oct 23, 2025Updated last year
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆17Oct 12, 2018Updated 8 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆39Feb 26, 2023Updated 3 years ago
- MIMIX: a Bayesian Mixed-Effects Model for Microbiome Data from Designed Experiments☆11Jul 9, 2020Updated 6 years ago
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- Fast, accurate taxonomic assignments for the human vaginal microbiota☆11Mar 19, 2026Updated 7 months ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 3 years ago
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆15Dec 5, 2025Updated 10 months ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A genome binning method for contig binning, based on semi-supervised spectral clustering method.☆12Nov 21, 2020Updated 5 years ago
- Strain Resolution ON Graphs☆50Jul 18, 2023Updated 3 years ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆24Jun 3, 2025Updated last year
- Virus Identification By iteRative ANnoTation☆209Apr 15, 2024Updated 2 years ago
- geNomad: Identification of mobile genetic elements☆341Oct 14, 2026Updated 2 weeks ago
- Automated discovery and curation of Auxiliary Metabolic Genes (AMGs), Auxiliary Regulatory Genes (AReGs), and Auxiliary Physiology Genes …☆24Updated this week
- Command line tool to plot genomic coverage from a BAM file☆14Apr 5, 2023Updated 3 years ago