Metagenomic binning based on Hi-C data
☆29Aug 7, 2025Updated 11 months ago
Alternatives and similar repositories for metaTOR
Users that are interested in metaTOR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆25Jun 26, 2025Updated last year
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆44Apr 27, 2026Updated 2 months ago
- Analyzing Hi-C data in R with HiCExperiment objects☆16Apr 29, 2026Updated 2 months ago
- ☆20Oct 23, 2025Updated 9 months ago
- Importing and manipulating Hi-C data in R☆13Apr 29, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps☆70Jul 7, 2026Updated 2 weeks ago
- SemiBin: metagenomics binning with self-supervised deep learning☆173Updated this week
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Dec 7, 2021Updated 4 years ago
- Lightweight bioinformatics pipeline for microbial genome recovery☆18Oct 23, 2025Updated 9 months ago
- Rapid comparison and dereplication of genomes☆349Jul 16, 2026Updated last week
- (check out instaGRAAL for a faster, updated program!) This program is from Marie-Nelly et al., Nature Communications, 2014 (High-qualit…☆15Nov 22, 2022Updated 3 years ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆24Jun 3, 2025Updated last year
- A genome binning method for contig binning, based on semi-supervised spectral clustering method.☆12Nov 21, 2020Updated 5 years ago
- A Survey of Canteen Desserts at Institut Pasteur☆12Nov 18, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Read-pair simulation of 3C-based sequencing methodologies (HiC, Meta3C, DNase-HiC)☆21Jul 10, 2024Updated 2 years ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated last month
- Static website for the PH4AGE alliance☆13Oct 27, 2023Updated 2 years ago
- An introductory course to Python by the Center of Health Data Science (University of Copenhagen)☆22May 4, 2026Updated 2 months ago
- ☆10Feb 28, 2018Updated 8 years ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆12Mar 11, 2020Updated 6 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆42May 18, 2026Updated 2 months ago
- Bioinformatic Application for Quantification and LAbeling of VirAl taxonomy☆17Jul 13, 2026Updated last week
- Command line tool to plot genomic coverage from a BAM file☆14Apr 5, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Reference-free quality assessment for Hi-C sequencing data☆13Apr 30, 2024Updated 2 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Mar 17, 2025Updated last year
- A tool for visualization of pairwise alignments of multiple sequences☆19Aug 12, 2025Updated 11 months ago
- Develop and host GitHub actions for Bioconductor☆11Apr 22, 2021Updated 5 years ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Dec 1, 2023Updated 2 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆20Dec 18, 2022Updated 3 years ago
- AC-DIAMOND is a DNA-protein alignment tool☆17Oct 11, 2023Updated 2 years ago
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Jul 22, 2022Updated 4 years ago
- personal genome constructor☆11May 29, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆38May 25, 2026Updated 2 months ago
- MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data☆12Mar 8, 2025Updated last year
- PlasMAAG is a tool to recover plasmids and organisms from metagenomic samples☆31Jun 22, 2026Updated last month
- ancestral reconstruction and likelihood analysis for CRISPR spacer arrays☆11May 7, 2025Updated last year
- Python package to run DefensePredictor, a machine learning model to identify proteins involved in anti-phage defense☆53Apr 27, 2026Updated 2 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆38Feb 26, 2023Updated 3 years ago
- This R package is used to calculate CO2 and CH4 gas fluxes measured with static chamber method. It provide a easy way to calculate multip…☆11May 20, 2021Updated 5 years ago