merenlab / world-map-r
A simple script to display stuff on a world map with R and ggplot
☆17Updated last year
Related projects: ⓘ
- Tools for extracting individual genomes from metagenomes☆17Updated 9 months ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆27Updated 2 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Improvement of metagenome-assembled genomes☆48Updated 4 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆46Updated last year
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆24Updated 2 years ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆13Updated 2 years ago
- ☆13Updated 6 years ago
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆10Updated 4 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆45Updated last year
- Protocol for finding informative protein families and then using them to score metagenomic sets.☆9Updated 2 years ago
- Bacterial taxonomy construction and evaluation in R☆12Updated 7 months ago
- ☆37Updated last month
- Calculate assocations between genes and traits☆18Updated 2 months ago
- ☆22Updated last year
- ☆14Updated 3 years ago
- Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…☆17Updated 2 years ago
- Automatic Assembly For The Fungi☆19Updated last year
- MAG Circularization Method☆31Updated 2 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆23Updated this week
- ☆23Updated 5 years ago
- Metagenomic Analysis in Real Time☆17Updated last month
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆42Updated 4 years ago
- ☆13Updated 7 years ago
- scripts for microbiome analysis☆11Updated last month
- ☆14Updated last month
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆25Updated 11 months ago
- BEAV: Bacterial Element Annotation reVamped☆55Updated 2 weeks ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Updated 2 years ago
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆19Updated 2 years ago