algbio / MFD-ILPLinks
Fast and exact ILP-based solvers for the Minimum Flow Decomposition problem, and variants of it.
☆14Updated 2 months ago
Alternatives and similar repositories for MFD-ILP
Users that are interested in MFD-ILP are comparing it to the libraries listed below
Sorting:
- ☆41Updated last week
- General purpose utility related to GAF files☆29Updated last week
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆17Updated last year
- A multiscale pangenome browser☆28Updated last month
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆23Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Updated this week
- ☆19Updated 11 months ago
- Methods to determine sequence element (unitig) presence/absence☆23Updated 2 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆36Updated last year
- ☆14Updated last week
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- Construct a Physical Map from Linked Reads☆18Updated last year
- Long-read aligner to pangenome graphs☆29Updated last year
- EMERALD calculates safety-windows by exploring the suboptimal alignment space☆17Updated 3 weeks ago
- Open Human Genome Library☆60Updated last month
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆34Updated 8 months ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated last month
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆18Updated 2 weeks ago
- ☆46Updated 2 months ago
- GBWT-based handle graph☆31Updated this week
- Python wrapper for wavefront alignment using WFA2-lib☆38Updated last year
- Targeted genotyper for complex polymorphic genes☆33Updated this week
- Genomic sequence aligner☆33Updated 3 months ago
- ☆23Updated 4 months ago
- ☆26Updated 4 years ago
- ☆28Updated last year
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36Updated 8 months ago