fanglab / mbinLinks
mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads
☆25Updated 2 years ago
Alternatives and similar repositories for mbin
Users that are interested in mbin are comparing it to the libraries listed below
Sorting:
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- ☆22Updated 5 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆39Updated 2 weeks ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 3 weeks ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆14Updated 4 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆67Updated last week
- ☆53Updated 4 years ago
- Gene-flank analysis tool☆28Updated 6 months ago
- Filter SAM file for soft and hard clipped alignments☆49Updated last year
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated 5 months ago
- ☆32Updated 2 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- metag-rev-sup☆22Updated 8 years ago
- reference-based long read assemblies of bacterial genomes☆50Updated 3 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- ☆41Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- ☆20Updated 8 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago