Alternatives and similar repositories for graphmap2:

Users that are interested in graphmap2 are comparing it to the libraries listed below

• twolinin / longphase
  ☆110Updated this week
• bcgsc / ntJoin
  🔗Genome assembly scaffolder using minimizer graphs
  ☆83Updated 7 months ago
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆74Updated 4 years ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆113Updated 2 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆115Updated 3 weeks ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆110Updated 10 months ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆103Updated 2 weeks ago
• BioInf-Wuerzburg / proovread
  PacBio hybrid error correction through iterative short read consensus
  ☆61Updated 5 years ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆79Updated last year
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 3 months ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆133Updated last year
• ChaissonLab / LRA
  Long read aligner
  ☆115Updated last year
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 4 years ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆128Updated 3 weeks ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆111Updated 2 weeks ago
• epi2me-labs / wf-basecalling
  ☆39Updated 3 weeks ago
• epi2me-labs / modbam2bed
  ☆46Updated 8 months ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆80Updated this week
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆100Updated 7 months ago
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆115Updated 3 months ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆89Updated 2 weeks ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆100Updated 3 years ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆149Updated last month
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆45Updated 4 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆72Updated 4 years ago
• lh3 / unimap
  A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
  ☆88Updated 4 years ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆112Updated 5 months ago
• morispi / CONSENT
  Scalable long read self-correction and assembly polishing with multiple sequence alignment
  ☆55Updated last year
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆112Updated last month