Alternatives and similar repositories for graphmap2

Users that are interested in graphmap2 are comparing it to the libraries listed below

• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆107Updated 2 weeks ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆84Updated 4 months ago
• comprna / RATTLE
  Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
  ☆59Updated last year
• twolinin / longphase
  ☆122Updated 2 weeks ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆94Updated 3 weeks ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆105Updated 4 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆121Updated 3 months ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated 2 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆97Updated 2 years ago
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆113Updated last year
• epi2me-labs / modbam2bed
  ☆52Updated 4 months ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆115Updated last week
• Maggi-Chen / DeBreak
  Structural variant caller for real-time long-read sequencing data
  ☆61Updated 3 years ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆111Updated last year
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆118Updated 3 months ago
• tleonardi / nanocompore
  RNA modifications detection from Nanopore dRNA-Seq data
  ☆88Updated 3 weeks ago
• morispi / CONSENT
  Scalable long read self-correction and assembly polishing with multiple sequence alignment
  ☆53Updated 2 years ago
• lh3 / unimap
  A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
  ☆87Updated 4 years ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆117Updated 8 months ago
• JustinChu / JupiterPlot
  A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
  ☆90Updated last year
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆59Updated 3 years ago
• yukiteruono / pbsim2
  PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores
  ☆74Updated 2 years ago
• kishwarshafin / helen
  H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
  ☆73Updated 5 years ago
• kjenike / panagram
  ☆68Updated 2 weeks ago
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆128Updated last month
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆95Updated 9 months ago
• vpc-ccg / haslr
  A fast tool for hybrid genome assembly of long and short reads
  ☆78Updated 5 years ago
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆106Updated last week
• ChaissonLab / LRA
  Long read aligner
  ☆114Updated 2 years ago
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆101Updated 2 years ago