lbcb-sci / graphmap2Links
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html https://www.biorxiv.org/content/10.1101/720458v1
☆69Updated 3 years ago
Alternatives and similar repositories for graphmap2
Users that are interested in graphmap2 are comparing it to the libraries listed below
Sorting:
- A local-haplotagging-based small and structural variant caller☆88Updated 2 weeks ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆104Updated 4 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 2 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated last month
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 3 months ago
- Toolkit for calling structural variants using short or long reads☆112Updated 2 months ago
- Structural variant caller for real-time long-read sequencing data☆60Updated 3 years ago
- ☆68Updated last month
- Simple pileup-based variant caller☆94Updated 7 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- ☆119Updated 3 weeks ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Updated 5 years ago
- Fast and accurate coordinate conversion between assemblies☆117Updated last month
- A program for assessing the T2T genome continuity☆89Updated last month
- Visualise and analyse nanopore (ONT) raw signals☆124Updated 3 months ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- Call select base modifications in PacBio HiFi reads☆15Updated 3 weeks ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Pipeline to convert a haploid assembly into diploid☆108Updated 10 months ago
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Updated 5 years ago
- A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043☆69Updated last year
- ☆45Updated 8 years ago
- RNA modifications detection from Nanopore dRNA-Seq data☆87Updated 2 months ago
- Research release basecalling models and configurations☆117Updated 6 months ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆86Updated last year
- A fast tool for hybrid genome assembly of long and short reads☆78Updated 5 years ago