GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html https://www.biorxiv.org/content/10.1101/720458v1
☆68Aug 30, 2022Updated 4 years ago
Alternatives and similar repositories for graphmap2
Users that are interested in graphmap2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆182Jul 30, 2019Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Dec 11, 2019Updated 6 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Jan 18, 2016Updated 10 years ago
- Long-read splice alignment with high accuracy☆64Oct 8, 2026Updated 3 weeks ago
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆245Dec 29, 2023Updated 2 years ago
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 3 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 4 years ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆74Oct 28, 2020Updated 6 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆303May 9, 2024Updated 2 years ago
- Yet Another Chimeric Read Detector☆88Nov 7, 2024Updated last year
- A tool for Racon polishing of miniasm assemblies☆84Jul 24, 2026Updated 3 months ago
- A fast approximate aligner for long DNA sequences☆292Oct 11, 2024Updated 2 years ago
- Improved Phased Assembler☆29Mar 11, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PEPPER-Margin-DeepVariant☆261Jan 12, 2024Updated 2 years ago
- ☆46Jun 21, 2020Updated 6 years ago
- diploid SNV caller for error-prone reads☆212Apr 26, 2024Updated 2 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 5 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆67Feb 23, 2020Updated 6 years ago
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆528May 20, 2026Updated 5 months ago
- ☆291Dec 29, 2025Updated 10 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆39Sep 17, 2022Updated 4 years ago
- Long-read mock community experiments☆104Oct 8, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- De novo genome assembler for long uncorrected reads☆238Nov 15, 2023Updated 2 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆16Sep 11, 2020Updated 6 years ago
- Detect novel (and reference) STR expansions from short-read data☆72Dec 6, 2025Updated 10 months ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆56May 17, 2022Updated 4 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- Making diploid assembly becomes common practice for genomic study☆30Oct 2, 2017Updated 9 years ago
- Functions to compare a SV call sets against a truth set.☆32Jun 18, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A genomic k-mer counter (and sequence utility) with nice features.☆193Jul 21, 2026Updated 3 months ago
- Filter of Pairwise Alignement☆45Jan 31, 2022Updated 4 years ago
- Close assembly gaps using long-reads at high accuracy.☆52Feb 20, 2024Updated 2 years ago
- ☆35Feb 20, 2020Updated 6 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 5 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Mar 15, 2021Updated 5 years ago
- k-mer based assembly evaluation☆357Jul 6, 2026Updated 3 months ago