lbcb-sci / graphmap2
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html https://www.biorxiv.org/content/10.1101/720458v1
☆67Updated 2 years ago
Alternatives and similar repositories for graphmap2:
Users that are interested in graphmap2 are comparing it to the libraries listed below
- ☆107Updated this week
- A tool for Racon polishing of miniasm assemblies☆73Updated 3 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆131Updated last month
- Nanopore data assembler☆140Updated 2 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆110Updated 3 weeks ago
- Pipeline to convert a haploid assembly into diploid☆94Updated 7 months ago
- Yet another k-mer analyzer☆125Updated 9 months ago
- Toolkit for calling structural variants using short or long reads☆100Updated this week
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆88Updated 3 years ago
- A tool for somatic structural variant calling using long reads☆108Updated this week
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 2 months ago
- Pangenome-based genome inference☆121Updated this week
- Research release basecalling models and configurations☆104Updated 7 months ago
- Aligns short reads using dynamic seed size with strobemers☆160Updated this week
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆68Updated 10 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 3 months ago
- Analysis components from Oxford Nanopore Research☆93Updated 4 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆132Updated 2 months ago
- Long read aligner☆114Updated last year
- Comparison of multiple long read datasets☆121Updated last month
- Fast and accurate coordinate conversion between assemblies☆112Updated 3 months ago
- Same species annotation lift over pipeline.☆96Updated last year
- Dfam Transposable Element Tools Docker container.☆87Updated last month
- Tools for the analysis of structural variation in genomes☆78Updated 9 months ago
- Phased assembly variant caller☆107Updated last month
- RNA modifications detection from Nanopore dRNA-Seq data☆81Updated 11 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago