lbcb-sci / graphmap2Links
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html https://www.biorxiv.org/content/10.1101/720458v1
☆67Updated 2 years ago
Alternatives and similar repositories for graphmap2
Users that are interested in graphmap2 are comparing it to the libraries listed below
Sorting:
- ☆112Updated 3 weeks ago
- A tool for Racon polishing of miniasm assemblies☆75Updated 4 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 2 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated last month
- Toolkit for calling structural variants using short or long reads☆104Updated 2 weeks ago
- Long read aligner☆115Updated 2 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆88Updated 4 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆107Updated last week
- Structural Variant Identification Method using Genome Assemblies☆117Updated 2 years ago
- Analysis components from Oxford Nanopore Research☆93Updated 9 months ago
- Aligns short reads using dynamic seed size with strobemers☆169Updated this week
- 🔗Genome assembly scaffolder using minimizer graphs☆83Updated 8 months ago
- Variant calling tool for long-read sequencing data☆110Updated 2 months ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- Estimating k-mer coverage histogram of genomics data☆78Updated last year
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 8 months ago
- Fast and accurate coordinate conversion between assemblies☆113Updated 2 months ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 4 months ago
- Research release basecalling models and configurations☆110Updated 2 weeks ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- SV caller for nanopore data☆91Updated 4 years ago
- alignment to variation graph inducer☆148Updated 3 months ago
- vcfdist: Accurately benchmarking phased variant calls☆80Updated last month
- Simple pileup-based variant caller☆90Updated last month
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 3 weeks ago
- GenMap - Fast and Exact Computation of Genome Mappability☆107Updated 11 months ago
- Pangenome-based genome inference☆127Updated last month
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- Tools for the analysis of structural variation in genomes☆79Updated last year