cerebis / bin3CLinks
Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.
☆24Updated last month
Alternatives and similar repositories for bin3C
Users that are interested in bin3C are comparing it to the libraries listed below
Sorting:
- Call select base modifications in PacBio HiFi reads☆10Updated 6 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- ☆77Updated 5 years ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆43Updated 3 weeks ago
- ☆32Updated 4 years ago
- TGS scaffolding☆46Updated 3 years ago
- finshingTool☆54Updated 8 years ago
- ☆63Updated 2 weeks ago
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Gmove is a gene prediction tool☆21Updated 10 months ago
- ☆53Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆61Updated 5 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆45Updated 8 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last month
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 8 months ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆64Updated 5 years ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆29Updated 3 weeks ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Pipeline to convert a haploid assembly into diploid☆102Updated 6 months ago
- A tool for removing redundant genomes from a set of assemblies☆73Updated last year
- ☆44Updated 8 years ago
- A tool for evaluate long-read de novo assembly results☆48Updated 11 months ago
- k-mer learning materials☆73Updated 5 months ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 4 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago