Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.
☆25Jun 26, 2025Updated last year
Alternatives and similar repositories for bin3C
Users that are interested in bin3C are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Metagenomic binning based on Hi-C data☆30Updated this week
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 3 years ago
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆17Oct 12, 2018Updated 8 years ago
- Phasing for metagenomics using PacBio long reads☆16Jul 14, 2021Updated 5 years ago
- Read-pair simulation of 3C-based sequencing methodologies (HiC, Meta3C, DNase-HiC)☆21Jul 10, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆39Feb 26, 2023Updated 3 years ago
- MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data☆13Aug 26, 2026Updated 2 months ago
- OPERA-MS - Hybrid Metagenomic Assembler☆102Jul 3, 2024Updated 2 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆27Feb 24, 2022Updated 4 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆205Jul 31, 2026Updated 3 months ago
- The CRISPR assembler☆36May 13, 2021Updated 5 years ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆38Apr 10, 2026Updated 6 months ago
- Variational autoencoder for metagenomic binning☆335Apr 27, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 7 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆70Nov 24, 2025Updated 11 months ago
- Collection of tools for the analysis of CpG data☆115Jul 9, 2025Updated last year
- ☆63Sep 15, 2025Updated last year
- ☆20Nov 17, 2022Updated 3 years ago
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆44Apr 27, 2026Updated 6 months ago
- Lightweight bioinformatics pipeline for microbial genome recovery☆18Oct 23, 2025Updated last year
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 10 years ago
- ☆11Feb 2, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- DAS Tool☆178Oct 9, 2026Updated 3 weeks ago
- A multi-thread tool for identifying DNA methylation motifs from Pacbio reads☆11Mar 7, 2018Updated 8 years ago
- ☆14Mar 13, 2018Updated 8 years ago
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 5 years ago
- Reference-free quality assessment for Hi-C sequencing data☆13Apr 30, 2024Updated 2 years ago
- Statistical Analysis of Metagenomic Profiles☆93Sep 21, 2026Updated last month
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆74May 20, 2022Updated 4 years ago
- ViralCC: leveraging metagenomic proximity-ligation to retrieve complete viral genomes☆19Feb 3, 2026Updated 8 months ago
- Metagenomic binning suite☆29Sep 30, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Bioinformatics program inStrain☆193Oct 20, 2026Updated last week
- TGS scaffolding☆47Nov 19, 2021Updated 4 years ago
- Pan-genome Seed Index☆20Jul 3, 2026Updated 3 months ago
- Importing and manipulating Hi-C data in R☆13Oct 5, 2026Updated 3 weeks ago
- Long-read mock community experiments☆104Oct 8, 2021Updated 5 years ago
- Virus Identification By iteRative ANnoTation☆209Apr 15, 2024Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆71Aug 10, 2021Updated 5 years ago