Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.
☆25Jun 26, 2025Updated last year
Alternatives and similar repositories for bin3C
Users that are interested in bin3C are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Metagenomic binning based on Hi-C data☆30Aug 7, 2025Updated last year
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 3 years ago
- Phasing for metagenomics using PacBio long reads☆16Jul 14, 2021Updated 5 years ago
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆17Oct 12, 2018Updated 7 years ago
- Read-pair simulation of 3C-based sequencing methodologies (HiC, Meta3C, DNase-HiC)☆21Jul 10, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆39Feb 26, 2023Updated 3 years ago
- MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data☆13Aug 26, 2026Updated last month
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Reference-free quality assessment for Hi-C sequencing data☆13Apr 30, 2024Updated 2 years ago
- Lightweight bioinformatics pipeline for microbial genome recovery☆18Oct 23, 2025Updated 11 months ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 7 years ago
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆44Apr 27, 2026Updated 5 months ago
- The CRISPR assembler☆35May 13, 2021Updated 5 years ago
- ☆14Mar 13, 2018Updated 8 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 10 years ago
- Importing and manipulating Hi-C data in R☆12Updated this week
- OPERA-MS - Hybrid Metagenomic Assembler☆102Jul 3, 2024Updated 2 years ago
- ViralCC: leveraging metagenomic proximity-ligation to retrieve complete viral genomes☆19Feb 3, 2026Updated 8 months ago
- Long-read mock community experiments☆103Oct 8, 2021Updated 5 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆45Aug 19, 2026Updated last month
- Pan-genome Seed Index☆20Jul 3, 2026Updated 3 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆71Aug 10, 2021Updated 5 years ago
- DAS Tool☆176May 2, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Analyzing Hi-C data in R with HiCExperiment objects☆16Updated this week
- ☆63Sep 15, 2025Updated last year
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆70May 22, 2021Updated 5 years ago
- Bioinformatics program inStrain☆192Updated this week
- KBase distribution module for RASTtk.☆15Sep 14, 2020Updated 6 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Mar 30, 2024Updated 2 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- SemiBin: metagenomics binning with self-supervised deep learning☆175Oct 1, 2026Updated last week
- Statistical Analysis of Metagenomic Profiles☆93Sep 21, 2026Updated 2 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Virus Identification By iteRative ANnoTation☆205Apr 15, 2024Updated 2 years ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆205Jul 31, 2026Updated 2 months ago
- Static website for the PH4AGE alliance☆14Oct 27, 2023Updated 2 years ago
- Variational autoencoder for metagenomic binning☆333Apr 27, 2026Updated 5 months ago
- ☆10Feb 28, 2018Updated 8 years ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆12Mar 11, 2020Updated 6 years ago
- A flexible python program for generating figures from regions of the genome.☆13Apr 6, 2019Updated 7 years ago