felsenst / phylipLinks
PHYLIP package starting with version 4.0a
☆19Updated last week
Alternatives and similar repositories for phylip
Users that are interested in phylip are comparing it to the libraries listed below
Sorting:
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 5 years ago
- Contains the description of a file format to store kmers and associated values☆34Updated 3 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated last week
- Non-redundant pangenome assemblies from multiple genomes or bins☆14Updated 7 months ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- Indel-aware consensus for aligned BAM☆21Updated 4 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated 2 years ago
- blast, shmlast☆21Updated 5 years ago
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Find Unique genomic Regions☆32Updated 2 months ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 6 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- ☆20Updated 2 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆20Updated last month
- Manipulate and generate figures for trees in Newick format☆22Updated 5 months ago
- ☆28Updated 9 months ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Updated 5 months ago
- reference free variant assembly☆34Updated 2 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 4 months ago
- de novo targeted gene assembly☆22Updated 4 years ago
- Variant call verification☆16Updated 7 months ago
- ☆15Updated 7 years ago
- ☆14Updated 7 months ago
- Better Alignments with Translated HMMER☆24Updated last week
- Paired reads mapping on de Bruijn graph☆13Updated 6 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago