mjsull / chromatiblockLinks
Colinear block visualisation tool
☆31Updated last year
Alternatives and similar repositories for chromatiblock
Users that are interested in chromatiblock are comparing it to the libraries listed below
Sorting:
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 6 months ago
- Genome size estimation from long read overlaps☆62Updated last month
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Recombination-free trees☆60Updated last month
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆28Updated 3 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated last week
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆43Updated 6 months ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 7 months ago
- Intra-species bacterial contamination detection☆25Updated 8 months ago
- Plasmid analysis using rearrangement distances☆46Updated last month
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆63Updated 4 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- viralFlye pipeline☆18Updated last year
- CFSAN Shigella Typing Pipeline☆15Updated 2 years ago
- Order and orientation of complete bacterial genomes☆28Updated 3 months ago
- frame-shift correction for long-read (meta)genomics☆33Updated last year
- Genomic neighbor typing of bacterial pathogens using MinHash☆43Updated 2 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆100Updated last month
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Updated 2 years ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆33Updated last month