β36Nov 20, 2023Updated 2 years ago
Alternatives and similar repositories for GraphMB
Users that are interested in GraphMB are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- π¦π§¬ Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphsβ69Jun 15, 2026Updated last month
- Phasing for metagenomics using PacBio long readsβ16Jul 14, 2021Updated 5 years ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact mapsβ14May 4, 2023Updated 3 years ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Compositionβ20Sep 10, 2024Updated last year
- Nanomotif - a tool for identifying methylated motifs in metagenomic samplesβ36Apr 10, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI β’ AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.β33Apr 25, 2026Updated 2 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomesβ55Oct 24, 2025Updated 8 months ago
- A new high-resolution long-read metagenome assembler for even noisy readsβ157Jul 3, 2026Updated 2 weeks ago
- β79Mar 10, 2024Updated 2 years ago
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG standβ¦β16Aug 28, 2024Updated last year
- SemiBin: metagenomics binning with self-supervised deep learningβ172Updated this week
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencingβ21Feb 3, 2023Updated 3 years ago
- A genome binning method for contig binning, based on semi-supervised spectral clustering method.β12Nov 21, 2020Updated 5 years ago
- Set of utilities on sequences and BAM filesβ27Oct 27, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A hybrid assembly and MAG recovery pipeline (and more!)β109Jul 10, 2026Updated last week
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing readsβ26Dec 26, 2022Updated 3 years ago
- MAG Circularization Methodβ33Nov 4, 2025Updated 8 months ago
- Lightweight bioinformatics pipeline for microbial genome recoveryβ18Oct 23, 2025Updated 8 months ago
- tiara β a tool for DNA sequence classificationβ86Mar 2, 2024Updated 2 years ago
- MAGScoT - a MAG scoring and refinement toolβ48Apr 8, 2026Updated 3 months ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.β24Feb 22, 2026Updated 4 months ago
- β―οΈπ§¬ Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphsβ37Oct 24, 2025Updated 8 months ago
- β27Jun 20, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting β’ AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.β224May 9, 2026Updated 2 months ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmaxβ37Jun 1, 2026Updated last month
- Automated strain separation of low-complexity metagenomesβ52Nov 10, 2021Updated 4 years ago
- More scalable dereplication for metagenome assembled genomesβ87Jul 14, 2026Updated last week
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.β314Feb 3, 2026Updated 5 months ago
- Graph-based assembly phasingβ99Nov 25, 2025Updated 7 months ago
- Assessing the quality of metagenome-derived genome bins using machine learningβ271Mar 20, 2025Updated last year
- Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.β31Feb 3, 2026Updated 5 months ago
- GTDB => NCBIβ15Nov 14, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A workflow and scripts for large-scale antiSMASH analysesβ51Apr 3, 2025Updated last year
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NGβ¦β12Sep 18, 2024Updated last year
- Non-redundant pangenome assemblies from multiple genomes or binsβ15May 13, 2025Updated last year
- Variational autoencoder for metagenomic binningβ330Apr 27, 2026Updated 2 months ago
- β16Jan 28, 2026Updated 5 months ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing dataβ29Jan 15, 2026Updated 6 months ago
- Classify metagenomic contigs as eukaryotic or prokaryoticβ46Feb 17, 2023Updated 3 years ago