MicrobialDarkMatter / GraphMB

Related projects ⓘ

Alternatives and complementary repositories for GraphMB

• rvicedomini / strainberry
  Automated strain separation of low-complexity metagenomes
  ☆51Updated 3 years ago
• cultivarium / MicrobeMod
  A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
  ☆39Updated 3 months ago
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆46Updated 4 months ago
• ziyewang / COMEBin
  ☆38Updated 8 months ago
• metagentools / MetaCoAG
  🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
  ☆59Updated last month
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆25Updated last week
• lmrodriguezr / nonpareil
  Estimate metagenomic coverage and sequence diversity
  ☆46Updated 3 months ago
• rrwick / Assembly-Dereplicator
  A tool for removing redundant genomes from a set of assemblies
  ☆68Updated last year
• Serka-M / mmlong2
  Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
  ☆38Updated 5 months ago
• bioinfo-ut / PlasmidSeeker
  A k-mer based program for the identification of known plasmids from whole-genome sequencing reads
  ☆35Updated 3 years ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆36Updated last month
• aldertzomer / RFPlasmid
  Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf
  ☆48Updated 7 months ago
• Shamir-Lab / SCAPP
  SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…
  ☆28Updated last year
• rrwick / Rebaler
  reference-based long read assemblies of bacterial genomes
  ☆47Updated 3 years ago
• wandreopoulos / deeplasmid
  ☆17Updated 2 months ago
• sxh1136 / Phage_tools
  Phage prediction tools
  ☆15Updated last year
• ziyewang / MetaBinner
  ☆48Updated 8 months ago
• gbouras13 / plassembler
  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
  ☆51Updated 6 months ago
• a-h-b / binny
  ☆28Updated last year
• patrickwest / EukRep_Pipeline
  ☆24Updated 5 years ago
• HIT-ImmunologyLab / DBSCAN-SWA
  ☆30Updated 11 months ago
• gtonkinhill / panstripe
  post processing of bacterial pangenome gene presence/absence matrices
  ☆52Updated 2 months ago
• tseemann / phastaf
  Identify phage regions in bacterial genomes for masking purposes
  ☆30Updated 5 years ago
• Yasas1994 / Jaeger
  Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
  ☆25Updated last week
• brinkmanlab / islandpath
  IslandPath standalone software
  ☆31Updated last year
• apcamargo / ictv-mmseqs2-protein-database
  ☆23Updated 9 months ago
• gatech-genemark / MetaGeneMark-2
  MetaGeneMark-2: Improved Gene Prediction in Metagenomes
  ☆18Updated 8 months ago
• marbl / harvest
  ☆51Updated 3 years ago
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆26Updated 5 months ago
• cerebis / bin3C
  Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.
  ☆23Updated 9 months ago