bjtully / BioDataLinks
All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
☆78Updated 2 years ago
Alternatives and similar repositories for BioData
Users that are interested in BioData are comparing it to the libraries listed below
Sorting:
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆87Updated last year
- Horizontal gene transfer (HGT) identification pipeline☆63Updated 2 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- Bioinformatics Tools☆89Updated 3 weeks ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆88Updated 2 years ago
- DDBJ Fast Annotation and Submission Tool☆83Updated last month
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆58Updated last year
- A toolbox for comparative genomics.☆105Updated 4 years ago
- IS mapping software☆56Updated 3 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆144Updated last week
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆61Updated 6 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆78Updated last month
- Making whole bacterial genome sequencing data analysis easy☆113Updated 6 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆116Updated last year
- Bioinformatics tool to find integrons in bacterial genomes☆81Updated 5 months ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆49Updated 4 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆99Updated 6 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆81Updated 10 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆73Updated 5 months ago
- Collection of scripts for bacterial genomics☆48Updated 5 years ago
- ☆54Updated 3 months ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆98Updated 2 years ago
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago
- Convert GTDB taxonomy to NCBI taxdump format☆73Updated 2 years ago
- ☆69Updated this week
- Supporting code for uncultivated gut virus manuscript☆75Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 6 months ago