LomanLab / mockcommunityLinks
Long-read mock community experiments
☆104Updated 4 years ago
Alternatives and similar repositories for mockcommunity
Users that are interested in mockcommunity are comparing it to the libraries listed below
Sorting:
- A fast whole-genome aligner based on de Bruijn graphs☆156Updated 6 months ago
- ONT assembly and Illumina polishing pipeline☆89Updated 5 years ago
- OPERA-MS - Hybrid Metagenomic Assembler☆99Updated last year
- ☆81Updated 5 years ago
- Foreign Contamination Screening caller scripts and documentation☆155Updated 10 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- A tool for Racon polishing of miniasm assemblies☆78Updated 4 months ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆80Updated 5 years ago
- ☆84Updated 2 years ago
- DDBJ Fast Annotation and Submission Tool☆83Updated 4 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆148Updated 3 months ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Updated 6 years ago
- Long-read metagenomic analysis☆108Updated 2 years ago
- Get assembly statistics from FASTA and FASTQ files☆124Updated 2 years ago
- Analysis components from Oxford Nanopore Research☆96Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆146Updated last week
- Reference-free profiling of polyploid genomes☆139Updated 3 months ago
- Nanopore data assembler☆163Updated 3 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆54Updated last year
- De novo assembly from Oxford Nanopore reads.☆88Updated 2 months ago
- Pipeline to convert a haploid assembly into diploid☆109Updated 11 months ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 5 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆154Updated last week
- Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/☆80Updated 5 years ago
- Development version of Easyfig☆103Updated 2 years ago
- "Reads to report" for public health and clinical microbiology☆142Updated last month
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆133Updated last year
- Clustering cONtigs with COverage and ComposiTion☆135Updated 5 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆174Updated 4 years ago
- Interactive quality assessment of genome assemblies☆116Updated last month