Alternatives and similar repositories for mockcommunity

Users that are interested in mockcommunity are comparing it to the libraries listed below

• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆153Updated 3 months ago
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆147Updated 7 months ago
• SorenKarst / longread_umi
  ☆79Updated 5 years ago
• nanoporetech / ont-assembly-polish
  ONT assembly and Illumina polishing pipeline
  ☆89Updated 4 years ago
• CSB5 / OPERA-MS
  OPERA-MS - Hybrid Metagenomic Assembler
  ☆100Updated last year
• marbl / parsnp
  Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…
  ☆146Updated 3 weeks ago
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆83Updated last month
• rrwick / Metagenomics-Index-Correction
  ☆84Updated 2 years ago
• nanoporetech / qcat
  qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.
  ☆81Updated 4 years ago
• sanger-pathogens / assembly-stats
  Get assembly statistics from FASTA and FASTQ files
  ☆123Updated 2 years ago
• rrwick / Long-read-assembler-comparison
  Benchmarking of long-read assembly tools for bacterial whole genomes
  ☆172Updated 4 years ago
• avierstr / amplicon_sorter
  Sorts amplicons from Nanopore sequencing data based on similarity
  ☆39Updated 2 weeks ago
• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆113Updated 5 months ago
• tseemann / nullarbor
  "Reads to report" for public health and clinical microbiology
  ☆141Updated last year
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆78Updated last month
• bonsai-team / Porechop_ABI
  Adapter trimmer for Oxford Nanopore reads using ab initio method
  ☆52Updated 11 months ago
• mjsull / Easyfig
  Development version of Easyfig
  ☆100Updated last year
• DiltheyLab / MetaMaps
  Long-read metagenomic analysis
  ☆106Updated 2 years ago
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆140Updated 2 months ago
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆106Updated last year
• nanoporetech / pomoxis
  Analysis components from Oxford Nanopore Research
  ☆95Updated last year
• BinPro / CONCOCT
  Clustering cONtigs with COverage and ComposiTion
  ☆134Updated 5 years ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆129Updated 3 weeks ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆161Updated 3 years ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆172Updated 4 years ago
• qiyunlab / HGTector
  HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
  ☆136Updated 2 years ago
• linzhi2013 / MitoZ
  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
  ☆131Updated 11 months ago
• chrishah / MITObim
  MITObim - mitochondrial baiting and iterative mapping
  ☆114Updated 4 years ago
• rrwick / August-2019-consensus-accuracy-update
  A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies
  ☆60Updated 6 years ago
• ncbi / SKESA
  SKESA assembler
  ☆123Updated last year