LomanLab / mockcommunityLinks
Long-read mock community experiments
☆106Updated 3 years ago
Alternatives and similar repositories for mockcommunity
Users that are interested in mockcommunity are comparing it to the libraries listed below
Sorting:
- A fast whole-genome aligner based on de Bruijn graphs☆153Updated last month
- Foreign Contamination Screening caller scripts and documentation☆134Updated 5 months ago
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- ☆78Updated 4 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆173Updated 4 years ago
- OPERA-MS - Hybrid Metagenomic Assembler☆97Updated last year
- Get assembly statistics from FASTA and FASTQ files☆122Updated 2 years ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆81Updated 4 years ago
- Clustering cONtigs with COverage and ComposiTion☆132Updated 5 years ago
- ☆84Updated last year
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆146Updated 3 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- A tool for Racon polishing of miniasm assemblies☆77Updated 2 months ago
- Analysis components from Oxford Nanopore Research☆94Updated 11 months ago
- Read Until client library for Nanopore Sequencing☆104Updated 11 months ago
- "Reads to report" for public health and clinical microbiology☆141Updated last year
- DDBJ Fast Annotation and Submission Tool☆81Updated 3 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆167Updated last week
- Reference-free profiling of polyploid genomes☆121Updated 2 months ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- Nanopore data assembler☆160Updated 3 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆140Updated last week
- Long-read metagenomic analysis☆104Updated last year
- ☆137Updated 3 months ago
- Interactive quality assessment of genome assemblies☆105Updated 3 months ago
- The ARTIC field bioinformatics pipeline☆125Updated last month
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆143Updated 3 weeks ago
- De novo assembly from Oxford Nanopore reads.☆83Updated 2 months ago
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆125Updated last week
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆46Updated last year