Long-read mock community experiments
☆104Oct 8, 2021Updated 4 years ago
Alternatives and similar repositories for mockcommunity
Users that are interested in mockcommunity are comparing it to the libraries listed below
Sorting:
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆67Nov 4, 2021Updated 4 years ago
- Histosketching Using Little Kmers☆56May 25, 2023Updated 2 years ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Aug 6, 2019Updated 6 years ago
- ☆84Sep 13, 2023Updated 2 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- Pan-genome inference and genotyping with long noisy or short accurate reads☆119Dec 13, 2024Updated last year
- a long read simulator that can imitate many types of read problems☆267Jul 22, 2024Updated last year
- Benchmarking of long-read assembly tools for bacterial whole genomes☆170Mar 15, 2021Updated 4 years ago
- A comparison of different Oxford Nanopore basecallers☆316Aug 5, 2019Updated 6 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆70Aug 30, 2022Updated 3 years ago
- ☆15Jun 27, 2024Updated last year
- ☆10Dec 28, 2023Updated 2 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Long read metagenomics practical at EBAME18☆18Oct 3, 2018Updated 7 years ago
- Read Until client library for Nanopore Sequencing☆109Sep 25, 2024Updated last year
- Long-read metagenomic analysis☆110Oct 10, 2023Updated 2 years ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆115Nov 20, 2023Updated 2 years ago
- ☆18Nov 21, 2024Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆340Sep 11, 2025Updated 5 months ago
- A simple tool for extracting reads from Oxford Nanopore fast5 files☆26Sep 4, 2017Updated 8 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Apr 5, 2024Updated last year
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 5 years ago
- ✨🧬 Refined binning of metagenomic contigs using assembly graphs☆97Mar 6, 2025Updated 11 months ago
- A long read simulator based on badread idea☆22Oct 7, 2022Updated 3 years ago
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 4 months ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆80Dec 15, 2020Updated 5 years ago
- A fast approximate aligner for long DNA sequences☆286Oct 11, 2024Updated last year
- MetaCompass: Reference-guided Assembly of Metagenomes☆42Aug 13, 2025Updated 6 months ago
- Signal-level algorithms for MinION data☆594Aug 5, 2023Updated 2 years ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆207Sep 22, 2023Updated 2 years ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 4 years ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆299Apr 25, 2025Updated 10 months ago
- Variational autoencoder for metagenomic binning☆317Updated this week
- hybrid assembly pipeline for bacterial genomes☆634Jul 25, 2024Updated last year
- Code to create a PRG from a Multiple Sequence Alignment file☆25Sep 10, 2025Updated 5 months ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆73May 20, 2022Updated 3 years ago
- ✏️ Genome assembly polishing & SNV detection☆72Oct 3, 2025Updated 4 months ago