LomanLab / mockcommunity
Long-read mock community experiments
☆103Updated 2 years ago
Related projects: ⓘ
- ☆139Updated last week
- Foreign Contamination Screening caller scripts and documentation☆100Updated 3 months ago
- DDBJ Fast Annotation and Submission Tool☆76Updated 3 weeks ago
- ONT assembly and Illumina polishing pipeline☆91Updated 3 years ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆77Updated 3 years ago
- ☆78Updated last year
- Sorts amplicons from Nanopore sequencing data based on similarity☆31Updated 3 weeks ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆94Updated this week
- ☆76Updated 3 years ago
- A fast whole-genome aligner based on de Bruijn graphs☆140Updated last year
- Ultra-fast de novo assembler using long noisy reads☆129Updated 3 years ago
- A tool for Racon polishing of miniasm assemblies☆72Updated 3 years ago
- Get assembly statistics from FASTA and FASTQ files☆115Updated last year
- pbsv - PacBio structural variant (SV) calling and analysis tools☆125Updated last year
- OPERA-MS - Hybrid Metagenomic Assembler☆89Updated 2 months ago
- Read Until client library for Nanopore Sequencing☆102Updated 6 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆116Updated 3 months ago
- Reference-free profiling of polyploid genomes☆96Updated 2 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆114Updated 8 months ago
- Nanopore data assembler☆132Updated 2 years ago
- A bioinformatics tool for working with modified bases☆130Updated this week
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆127Updated last month
- Version 5 of the CAFE phylogenetics software☆111Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆79Updated 10 months ago
- "Reads to report" for public health and clinical microbiology☆134Updated 6 months ago
- De novo assembly from Oxford Nanopore reads.☆70Updated this week
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆56Updated 3 years ago
- Analysis components from Oxford Nanopore Research☆93Updated 2 weeks ago
- SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension☆45Updated 3 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆100Updated this week