compmetagen / strainest
StrainEst - abundance estimation of strains
☆21Updated 5 years ago
Alternatives and similar repositories for strainest:
Users that are interested in strainest are comparing it to the libraries listed below
- Ley Lab MetaGenome Profiler DataBase generator☆48Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- Automatic eukaryotic taxonomic classification☆28Updated 4 months ago
- Estimate metagenomic coverage and sequence diversity☆47Updated 5 months ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated last year
- ☆24Updated 6 years ago
- Strain Resolution ON Graphs☆47Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Improvement of metagenome-assembled genomes☆51Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆40Updated 4 years ago
- ☆26Updated this week
- MAG Circularization Method☆33Updated 2 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆37Updated 3 months ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- ☆16Updated 4 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome☆21Updated 3 months ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 2 months ago
- Mapping-Assisted Targeted-Assembly for Metagenomics☆19Updated last year
- Prophage Activity Estimator☆26Updated 8 months ago
- OPAL: Open-community Profiling Assessment tooL☆27Updated 2 weeks ago
- ☆18Updated 4 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Unified Human Gut Virome Catalog☆27Updated 6 months ago
- Split Kmer Analysis☆63Updated 2 years ago