SegataLab / cmseqLinks
Set of utilities on sequences and BAM files
☆26Updated 4 years ago
Alternatives and similar repositories for cmseq
Users that are interested in cmseq are comparing it to the libraries listed below
Sorting:
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆39Updated 4 months ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14Updated 2 years ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- Bacterial GWAS analysis☆46Updated last week
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- ☆62Updated last year
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 3 years ago
- Genomewide Epistasis Analysis on Bacteria☆15Updated 8 months ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- ☆21Updated 5 years ago
- ☆41Updated 4 years ago
- Discover and annotate the virome☆58Updated 3 months ago
- Automated strain separation of low-complexity metagenomes☆52Updated 4 years ago
- Workflows for metagenomic sequence data processing and analysis.☆16Updated 6 years ago
- Microbial agile accurate SNP Typer☆30Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Phasing for metagenomics using PacBio long reads☆16Updated 4 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆13Updated 3 months ago
- MAGScoT - a MAG scoring and refinement tool☆42Updated last year
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago