Set of utilities on sequences and BAM files
☆27Oct 27, 2021Updated 4 years ago
Alternatives and similar repositories for cmseq
Users that are interested in cmseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Sep 10, 2024Updated last year
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆14Oct 10, 2025Updated 6 months ago
- Tool to estimate genome quality of microbial eukaryotes☆40Aug 1, 2025Updated 8 months ago
- Improvement of metagenome-assembled genomes☆57Mar 17, 2020Updated 6 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆64Feb 27, 2024Updated 2 years ago
- SemiBin: metagenomics binning with self-supervised deep learning☆159Updated this week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆55Sep 7, 2025Updated 7 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆54Oct 24, 2025Updated 6 months ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 10 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆81Jun 17, 2024Updated last year
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆17May 18, 2020Updated 5 years ago
- DAS Tool☆172May 2, 2024Updated last year
- ☆58Apr 8, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Taxonomic classification of viruses at Order and Family level☆21Mar 1, 2023Updated 3 years ago
- ☆24Dec 5, 2018Updated 7 years ago
- ☆36Nov 20, 2023Updated 2 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Apr 1, 2023Updated 3 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25May 18, 2024Updated last year
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- AMBER: Assessment of Metagenome BinnERs☆33Apr 14, 2026Updated 2 weeks ago
- LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.☆32Apr 15, 2026Updated 2 weeks ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Assessing the quality of metagenome-derived genome bins using machine learning☆254Mar 20, 2025Updated last year
- OPERA-MS - Hybrid Metagenomic Assembler☆102Jul 3, 2024Updated last year
- Phasing for metagenomics using PacBio long reads☆16Jul 14, 2021Updated 4 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆29May 9, 2025Updated 11 months ago
- This is the supplementary code for CRC-multi-kingdom☆17Nov 8, 2021Updated 4 years ago
- Discovery of conserved gene clusters in multiple genomes☆130Jan 16, 2026Updated 3 months ago
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 7 years ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆89Mar 12, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bioinformatics program inStrain☆184Mar 12, 2026Updated last month
- ☆38Dec 6, 2023Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆44Apr 8, 2026Updated 3 weeks ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆45Feb 17, 2023Updated 3 years ago
- More scalable dereplication for metagenome assembled genomes☆80Mar 8, 2026Updated last month
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆44Mar 26, 2024Updated 2 years ago