yunwilliamyu / opalLinks
Metagenomic binning using low-density hashing a support vector machine
☆20Updated 5 years ago
Alternatives and similar repositories for opal
Users that are interested in opal are comparing it to the libraries listed below
Sorting:
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 9 months ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated last week
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- ☆15Updated 3 years ago
- simple and not slow ORF caller☆21Updated 2 months ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 5 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆17Updated 6 years ago
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15Updated 4 years ago
- exploring viral genome assembly with variation graph tools☆20Updated 5 years ago
- Indel-aware consensus for aligned BAM☆21Updated 4 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- ☆24Updated 4 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Updated 4 years ago
- HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs☆18Updated 9 years ago
- Bacterial Operon Finder for Functional Organization☆15Updated 2 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated last year
- ☆28Updated 9 months ago
- online notebooks for a review of genome sketching☆60Updated 6 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- reference free variant assembly☆34Updated 2 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated last month
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆27Updated 2 years ago
- Basecalling configuration prediction through FASTQ files☆32Updated last month
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Updated 2 years ago
- Find Unique genomic Regions☆32Updated 2 months ago
- Next Index to Query Kmer Intersection☆17Updated 2 years ago
- ☆15Updated 7 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago