yunwilliamyu / opalLinks
Metagenomic binning using low-density hashing a support vector machine
☆20Updated 4 years ago
Alternatives and similar repositories for opal
Users that are interested in opal are comparing it to the libraries listed below
Sorting:
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated 2 weeks ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- ☆15Updated 7 years ago
- exploring viral genome assembly with variation graph tools☆20Updated 5 years ago
- simple and not slow ORF caller☆21Updated 7 years ago
- Histosketching Using Little Kmers☆56Updated 2 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 6 months ago
- ☆44Updated 3 years ago
- Index kmtricks bf matrices☆45Updated 2 weeks ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 9 months ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Updated last year
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15Updated 4 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last week
- REINDEER REad Index for abuNDancE quERy☆56Updated 2 months ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- Find Unique genomic Regions☆30Updated last week
- Reference genome quality scores☆21Updated 4 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- AC-DIAMOND is a DNA-protein alignment tool☆16Updated last year
- ☆15Updated last year
- reference free variant assembly☆34Updated 2 years ago
- Locus and lineage tests for bacterial GWAS☆29Updated 7 years ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆37Updated last year
- online notebooks for a review of genome sketching☆60Updated 6 years ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆11Updated 3 years ago
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆16Updated last week
- ☆28Updated 5 months ago