Alternatives and similar repositories for MetaBCC-LR:

Users that are interested in MetaBCC-LR are comparing it to the libraries listed below

• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆29Updated last year
• Magdoll / MagPhase
  Phasing for metagenomics using PacBio long reads
  ☆17Updated 3 years ago
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆27Updated last year
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆49Updated 6 months ago
• metagentools / GraphBin2
  ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
  ☆33Updated 4 months ago
• Dmitry-Antipov / viralFlye
  viralFlye pipeline
  ☆18Updated 5 months ago
• broadinstitute / StrainGE
  strain-level analysis tools
  ☆34Updated 3 months ago
• althonos / orthoani
  A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.
  ☆19Updated last month
• taxprofiler / taxpasta
  TAXnomic Profile Aggregation and STAndardisation
  ☆34Updated 3 months ago
• raufs / skDER
  skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…
  ☆41Updated last month
• bacpop / PopPIPE
  Population analysis PIPEline 🛠🧬
  ☆16Updated last week
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆47Updated last month
• motu-tool / fetchMGs.pl
  ☆16Updated 4 years ago
• JensUweUlrich / Taxor
  Fast and space-efficient taxonomic classification of long reads
  ☆43Updated 3 months ago
• KoslickiLab / YACHT
  A mathematically characterized hypothesis test for organism presence/absence in a metagenome
  ☆30Updated last month
• phac-nml / refseq_masher
  Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database
  ☆40Updated 4 years ago
• NickJD / ORForise
  Comparison pipeline for Prokaryote Protein Coding Gene Predictors
  ☆22Updated 9 months ago
• LuoGroup2023 / PanTax
  Strain-level taxonomic classification of metagenomic data using pangenome graphs
  ☆22Updated 2 months ago
• iqbal-lab-org / pling
  Plasmid analysis using rearrangement distances
  ☆31Updated 2 months ago
• RabbitBio / RabbitTClust
  RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches
  ☆45Updated 8 months ago
• OLC-Bioinformatics / ConFindr
  Intra-species bacterial contamination detection
  ☆24Updated 2 months ago
• chrisquince / STRONG
  Strain Resolution ON Graphs
  ☆47Updated last year
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆25Updated 2 years ago
• danielpodlesny / samestr
  SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.
  ☆17Updated 4 months ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• Shamir-Lab / SCAPP
  SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…
  ☆31Updated last year
• ikmb / MAGScoT
  MAGScoT - a MAG scoring and refinement tool
  ☆31Updated 3 months ago
• nanoporetech / DTR-phage-pipeline
  ☆16Updated 10 months ago
• metagentools / metagenomic_binning_review
  Code used to analyse and plot metadata of metagenomic binning tools
  ☆11Updated 5 months ago
• mjsull / chromatiblock
  Colinear block visualisation tool
  ☆30Updated last year