anuradhawick / MetaBCC-LRLinks
Reference-free Binning of Metagenomics Long Reads using Coverage and Composition
☆21Updated 9 months ago
Alternatives and similar repositories for MetaBCC-LR
Users that are interested in MetaBCC-LR are comparing it to the libraries listed below
Sorting:
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- ☆16Updated last year
- Microbial agile accurate SNP Typer☆29Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated 2 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆25Updated 2 months ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆22Updated 3 months ago
- Genome size estimation from long read overlaps☆57Updated 2 months ago
- Find Unique genomic Regions☆30Updated 3 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated last month
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated last month
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated last week
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆39Updated last week
- Code used to analyse and plot metadata of metagenomic binning tools☆14Updated 10 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- snapper☆14Updated 11 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated 2 months ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆36Updated 3 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated last month
- software to identify primers that can distinguish genomes☆21Updated 5 months ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆24Updated last month
- A script for comparing old vs new versions of genome annotations☆21Updated last year
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 2 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆24Updated last week
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- strain-level analysis tools☆38Updated 8 months ago