anuradhawick / MetaBCC-LR
Reference-free Binning of Metagenomics Long Reads using Coverage and Composition
β20Updated 5 months ago
Alternatives and similar repositories for MetaBCC-LR:
Users that are interested in MetaBCC-LR are comparing it to the libraries listed below
- β―οΈπ§¬ Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphsβ33Updated 5 months ago
- Phasing for metagenomics using PacBio long readsβ17Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigsβ27Updated last year
- Microbial agile accurate SNP Typerβ29Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.β50Updated 7 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.β24Updated last week
- A mathematically characterized hypothesis test for organism presence/absence in a metagenomeβ30Updated this week
- Correcting errors in noisy long reads using variation graphsβ51Updated 2 years ago
- strain-level analysis toolsβ34Updated 4 months ago
- Strain Resolution ON Graphsβ47Updated last year
- Fast and space-efficient taxonomic classification of long readsβ43Updated this week
- Comparison pipeline for Prokaryote Protein Coding Gene Predictorsβ22Updated 10 months ago
- Genome size estimation from long read overlapsβ49Updated 2 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and metβ¦β43Updated last week
- viralFlye pipelineβ18Updated 6 months ago
- TAXnomic Profile Aggregation and STAndardisationβ35Updated 4 months ago
- β16Updated 4 years ago
- Set of utilities on sequences and BAM filesβ26Updated 3 years ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.β17Updated 5 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016β¦β31Updated 2 years ago
- Plasmid analysis using rearrangement distancesβ31Updated 3 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.β22Updated last week
- Code to create a PRG from a Multiple Sequence Alignment fileβ23Updated 11 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and meβ¦β22Updated 2 years ago
- Code used to analyse and plot metadata of metagenomic binning toolsβ12Updated 6 months ago
- MAGScoT - a MAG scoring and refinement toolβ31Updated 4 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes databaseβ41Updated 4 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic dataβ19Updated 5 months ago
- A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/plβ¦β26Updated 8 months ago
- Genomewide Epistasis Analysis on Bacteriaβ14Updated 5 months ago