alexcritschristoph / soil_popgenView external linksLinks
Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes
☆16Feb 26, 2020Updated 5 years ago
Alternatives and similar repositories for soil_popgen
Users that are interested in soil_popgen are comparing it to the libraries listed below
Sorting:
- Population genomics from metagenomes☆13Sep 1, 2024Updated last year
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 2 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Jun 24, 2021Updated 4 years ago
- bioinformatics learning☆13Oct 10, 2023Updated 2 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.☆13May 11, 2024Updated last year
- 生信常用分析☆13Aug 2, 2020Updated 5 years ago
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 5 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 3 years ago
- This is code for running Orthofinder -> PAML☆12Jul 27, 2016Updated 9 years ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆12Feb 6, 2026Updated last week
- single cell and bulk RNASeq analysis scripts☆14Jan 13, 2022Updated 4 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- ☆11Dec 15, 2025Updated 2 months ago
- Order and orientation of complete bacterial genomes☆29Jul 11, 2025Updated 7 months ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆13May 11, 2023Updated 2 years ago
- PowerBacGWAS: Power calculations for Bacterial GWAS☆13Feb 2, 2022Updated 4 years ago
- Extract metadata from biosamples in NCBI☆17Apr 12, 2021Updated 4 years ago
- I often use some of the self-written programs.☆16Nov 13, 2025Updated 3 months ago
- ☆15Nov 28, 2022Updated 3 years ago
- ☆16Jun 18, 2020Updated 5 years ago
- WGS Sequencing In Hadoop MapReduce☆15Oct 13, 2020Updated 5 years ago
- some useful scripts for working with genomics and sequencing data☆17Oct 31, 2019Updated 6 years ago
- Pipelines for Drosophila genome assembly and analysis☆16May 15, 2022Updated 3 years ago
- Download assembly files from NCBI☆13May 9, 2023Updated 2 years ago
- ☆17Nov 26, 2023Updated 2 years ago
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆15Aug 7, 2024Updated last year
- ☆19Nov 11, 2024Updated last year
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆16Feb 9, 2026Updated last week
- A pipeline for Bacterial Whole genome sequence data analysis☆16Jul 24, 2022Updated 3 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆17Dec 29, 2022Updated 3 years ago
- MetaCarvel: A scaffolder for metagenomes☆14Sep 17, 2024Updated last year
- Analysis of the population diversity of SARS-CoV-2 within and between individual patients☆15Apr 30, 2020Updated 5 years ago
- A genome binning method for contig binning, based on semi-supervised spectral clustering method.☆12Nov 21, 2020Updated 5 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Feb 10, 2026Updated last week
- Primer3Web is a simple web interface to primer3.☆17Aug 18, 2021Updated 4 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆99Jul 8, 2022Updated 3 years ago