alexcritschristoph / soil_popgenLinks
Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes
☆16Updated 5 years ago
Alternatives and similar repositories for soil_popgen
Users that are interested in soil_popgen are comparing it to the libraries listed below
Sorting:
- Download NCBI assembly genomes with ftp. rsync, ascp☆11Updated 3 years ago
- Quality control plotting for long reads☆10Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- ☆18Updated 3 years ago
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Updated 7 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆26Updated 3 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Program for finding horizontal gene transfer using BLAST result☆11Updated 2 years ago
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆14Updated last month
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆16Updated 2 years ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- MAG Circularization Method☆32Updated 3 years ago
- Population genomics from metagenomes☆12Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.☆16Updated 6 months ago
- A Swiss-Army-Knife for Bioinformaticians☆12Updated 2 weeks ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆21Updated 2 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- ZGA prokaryotic genome assembly and annotation pipeline☆13Updated last year
- Genomewide Epistasis Analysis on Bacteria☆14Updated 4 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Bacterial GWAS analysis☆43Updated last month
- Analysing the genomic context of mobile genes☆11Updated last month
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 6 months ago