alexcritschristoph / soil_popgenLinks
Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes
☆16Updated 5 years ago
Alternatives and similar repositories for soil_popgen
Users that are interested in soil_popgen are comparing it to the libraries listed below
Sorting:
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Population genomics from metagenomes☆12Updated last year
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Updated 3 years ago
- Analysing the genomic context of mobile genes☆11Updated 3 months ago
- Quality control plotting for long reads☆10Updated last year
- Microbial agile accurate SNP Typer☆29Updated last year
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Updated 7 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Bacterial GWAS analysis☆45Updated this week
- ☆18Updated 3 years ago
- A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.☆16Updated 7 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆22Updated last week
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 6 months ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- ☆20Updated 2 years ago
- Pangenome analysis of eukaryotes.☆19Updated 5 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Updated last year
- scripts for microbiome analysis☆11Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- MAG Circularization Method☆32Updated 3 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆28Updated 3 months ago