PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE allows automatic separation of the data.
☆25Feb 25, 2023Updated 3 years ago
Alternatives and similar repositories for partie
Users that are interested in partie are comparing it to the libraries listed below
Sorting:
- Get, parse, and extract information from the SRA metadata files☆46Sep 20, 2022Updated 3 years ago
- Git mirror of Bioconductor SRAdb package☆23Feb 20, 2018Updated 8 years ago
- Multinomial Logistic-Normal Models (really fast)☆20Feb 26, 2025Updated last year
- Metagenomic binning using low-density hashing a support vector machine☆20Oct 2, 2020Updated 5 years ago
- Homebrew tap for formulae to build ARB (http://www.arb-home.de) and related software.☆13Mar 22, 2025Updated 11 months ago
- Using kallisto for metagenomic analysis☆49Jan 12, 2017Updated 9 years ago
- Ancestral Sequence Reconstruction in Python☆14May 9, 2019Updated 6 years ago
- A genome binning method for contig binning, based on semi-supervised spectral clustering method.☆12Nov 21, 2020Updated 5 years ago
- ☆19Dec 6, 2022Updated 3 years ago
- sensitive and precise assembly of short sequencing reads☆163Oct 11, 2024Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Sep 23, 2022Updated 3 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Feb 2, 2026Updated last month
- Utility program for extracting sequences from a fasta/fastq file☆35Dec 23, 2024Updated last year
- StrainEst - abundance estimation of strains☆20Jan 17, 2020Updated 6 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Jan 6, 2026Updated last month
- Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 2…☆10Jan 12, 2019Updated 7 years ago
- Multiple Bacteria Genome Compressor (MBGC)☆11Feb 20, 2026Updated last week
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆55Jan 19, 2024Updated 2 years ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 4 years ago
- More scalable dereplication for metagenome assembled genomes☆77Dec 17, 2025Updated 2 months ago
- Parallel implementation of OrthoMCL☆21Aug 26, 2022Updated 3 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Oct 22, 2025Updated 4 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Sep 18, 2025Updated 5 months ago
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- ☆11Mar 10, 2024Updated last year
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 6 years ago
- Predict prokaryotic hosts for phage (meta) genomic sequences☆11Apr 4, 2022Updated 3 years ago
- Command line interface and Python client library for the One Codex API☆24Updated this week
- http://www.combio.pl/alfree☆23Jun 14, 2022Updated 3 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Jul 12, 2021Updated 4 years ago
- R Interface to the NCBI SRA metadata☆23Nov 19, 2018Updated 7 years ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 6 months ago
- Monster Lab: teaching the science of sequencing with Lego☆15Sep 14, 2018Updated 7 years ago
- Development repo for pyani-plus (the next iteration of pyani)☆25Updated this week
- RNA dependent RNA Polymerase Palmprint Analysis☆12Aug 1, 2024Updated last year
- Just another minhash implementation.☆12Feb 23, 2026Updated last week
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆78Jun 17, 2024Updated last year
- Long-read mock community experiments☆104Oct 8, 2021Updated 4 years ago