linsalrob / partie
PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE allows automatic separation of the data.
☆25Updated 2 years ago
Alternatives and similar repositories for partie:
Users that are interested in partie are comparing it to the libraries listed below
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated this week
- Detect contigs of complete circular genomes☆23Updated 5 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- StrainEst - abundance estimation of strains☆21Updated 5 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 3 months ago
- MAG Circularization Method☆33Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- Estimate metagenomic coverage and sequence diversity☆48Updated 8 months ago
- De novo Extraction of Strains from MetAgeNomes☆68Updated 4 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Gene-flank analysis tool☆27Updated 3 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆48Updated 2 years ago
- ☆20Updated 8 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- strain-level analysis tools☆36Updated 5 months ago
- Metagenomic binning suite☆29Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- StrainFinder☆26Updated 6 years ago
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- Improvement of metagenome-assembled genomes☆51Updated 5 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- ☆45Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 8 months ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated 10 months ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 3 years ago
- Strain Resolution ON Graphs☆47Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- A method of assessing sequence complexity based on kmer frequencies☆31Updated 7 years ago