grp-bork / guncLinks
Python package for detection of chimerism and contamination in prokaryotic genomes.
☆78Updated 2 years ago
Alternatives and similar repositories for gunc
Users that are interested in gunc are comparing it to the libraries listed below
Sorting:
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated last week
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- Identify phage regions in bacterial genomes for masking purposes☆33Updated 6 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆54Updated 3 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Updated 6 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated 3 weeks ago
- A tool for removing redundant genomes from a set of assemblies☆78Updated 4 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆57Updated 9 months ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 6 months ago
- ☆20Updated last year
- Bacterial GWAS analysis☆46Updated 2 weeks ago
- More scalable dereplication for metagenome assembled genomes☆75Updated last month
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆44Updated 2 months ago
- ☆33Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆83Updated last week
- ☆34Updated 2 years ago
- ☆56Updated 6 months ago
- Prophage Activity Estimator☆30Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- Recombination-free trees☆63Updated 5 months ago
- Prediction of prophages from bacterial genomes☆81Updated 7 months ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆80Updated 2 years ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- ☆24Updated 7 years ago
- Comparisons of multiple different prophage predictions☆26Updated 3 years ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago