grp-bork / guncLinks
Python package for detection of chimerism and contamination in prokaryotic genomes.
☆77Updated last year
Alternatives and similar repositories for gunc
Users that are interested in gunc are comparing it to the libraries listed below
Sorting:
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 6 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 5 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- More scalable dereplication for metagenome assembled genomes☆67Updated last week
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated last week
- ☆29Updated 2 years ago
- A tool for removing redundant genomes from a set of assemblies☆76Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆29Updated 3 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 4 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆52Updated last month
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated last year
- ☆20Updated 11 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- whole genome MLST analysis☆46Updated 2 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆73Updated 2 months ago
- ☆53Updated 2 months ago
- Prediction of prophages from bacterial genomes☆79Updated 2 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 4 months ago
- Prophage Activity Estimator☆26Updated last year
- Tool to estimate genome quality of microbial eukaryotes☆38Updated last month
- A python library for predicting phage lifestyle based on genome sequence☆38Updated 2 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆52Updated 2 months ago
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- ☆25Updated 6 years ago