grp-bork / guncLinks
Python package for detection of chimerism and contamination in prokaryotic genomes.
☆76Updated last year
Alternatives and similar repositories for gunc
Users that are interested in gunc are comparing it to the libraries listed below
Sorting:
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆64Updated last week
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 8 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- ☆54Updated 4 months ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- ☆31Updated 2 years ago
- ☆20Updated last year
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆51Updated last week
- Discover and annotate the virome☆53Updated 2 weeks ago
- Bacterial GWAS analysis☆45Updated last week
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 months ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆54Updated 5 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated last month
- A toolkit for prokaryotic comparative genomics☆51Updated 2 weeks ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆78Updated last month
- More scalable dereplication for metagenome assembled genomes☆71Updated 3 weeks ago
- A toolbox for improving metagenome-assembled genomes.☆62Updated 4 years ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆40Updated 2 weeks ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- ☆24Updated 6 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆50Updated last month
- BEAV: Bacterial Element Annotation reVamped☆72Updated 2 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 6 months ago
- Recombination-free trees☆60Updated 2 months ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated last week
- Automatic eukaryotic taxonomic classification☆28Updated 5 months ago