Python package for detection of chimerism and contamination in prokaryotic genomes.
☆90Mar 12, 2026Updated last month
Alternatives and similar repositories for gunc
Users that are interested in gunc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆249Oct 12, 2025Updated 6 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆257Mar 20, 2025Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆56Updated this week
- SemiBin: metagenomics binning with self-supervised deep learning☆161Apr 25, 2026Updated last week
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆301Feb 3, 2026Updated 3 months ago
- ☆75Mar 10, 2024Updated 2 years ago
- ☆58Apr 8, 2026Updated 3 weeks ago
- Graph-based assembly phasing☆94Nov 25, 2025Updated 5 months ago
- Variational autoencoder for metagenomic binning☆322Apr 27, 2026Updated last week
- Rapid determination of appropriate reference genomes.☆101Jan 22, 2025Updated last year
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆74Mar 14, 2026Updated last month
- Rapid comparison and dereplication of genomes☆336Nov 10, 2025Updated 5 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆636Feb 18, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Read alignment statistics for metagenomics☆396Apr 8, 2026Updated 3 weeks ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆185Apr 16, 2026Updated 2 weeks ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 10 months ago
- Improvement of metagenome-assembled genomes☆58Mar 17, 2020Updated 6 years ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆332Apr 20, 2026Updated 2 weeks ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆184Mar 17, 2026Updated last month
- TAXnomic Profile Aggregation and STAndardisation☆42Nov 18, 2025Updated 5 months ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆18Nov 24, 2025Updated 5 months ago
- MAGScoT - a MAG scoring and refinement tool☆44Apr 8, 2026Updated 3 weeks ago
- Metagenomic Binning Algorithm☆51Jan 16, 2026Updated 3 months ago
- geNomad: Identification of mobile genetic elements☆304Mar 29, 2026Updated last month
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆597Apr 21, 2026Updated 2 weeks ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆94Mar 30, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆213Mar 3, 2026Updated 2 months ago
- Bioinformatics program inStrain☆184Mar 12, 2026Updated last month
- Strain resolver for metagenomics☆80Aug 2, 2024Updated last year
- Assessing the quality of prokaryotic genomes, filtering and dereplication☆11Aug 26, 2022Updated 3 years ago
- DAS Tool☆173May 2, 2024Updated 2 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆44Sep 3, 2024Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Aug 10, 2021Updated 4 years ago