stajichlab / FGMP

Related projects: ⓘ

• stajichlab / AAFTF
  Automatic Assembly For The Fungi
  ☆19Updated last year
• flass / pantagruel
  a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome
  ☆46Updated last year
• MadsAlbertsen / mmgenome
  Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes
  ☆27Updated 7 years ago
• josephpetrone / RESCUE
  Resolving Species Level Classification Using Emu
  ☆12Updated 3 months ago
• lmlui / Jorg
  MAG Circularization Method
  ☆31Updated 2 years ago
• hsgweon / pipits
  Automated pipeline for analyses of fungal ITS from the Illumina
  ☆30Updated last month
• zheminzhou / SPARSE
  Strain Prediction and Analysis with Representative SEquence
  ☆18Updated this week
• tseemann / ekidna
  Assembly based core genome SNP alignments for bacteria
  ☆25Updated 4 years ago
• tseemann / mokka
  Annotate your metagenome assemblies
  ☆11Updated 6 years ago
• KasperSkytte / mmgenome2
  Tools for extracting individual genomes from metagenomes
  ☆17Updated 9 months ago
• tseemann / seeka
  Get microbial sequence data easier and faster
  ☆28Updated 4 years ago
• chrisruis / MutTui
  MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets
  ☆25Updated 2 months ago
• jessiewu / bacterialGWAS
  A pipeline for performing genome-wide association tests for bacterial genomes.
  ☆28Updated 6 years ago
• leylabmpi / Struo
  Ley Lab MetaGenome Profiler DataBase generator
  ☆45Updated last year
• tseemann / berokka
  🍊 💫 Trim, circularise and orient long read bacterial genome assemblies
  ☆25Updated 5 years ago
• Microbiology / ccontigs
  Detect contigs of complete circular genomes
  ☆21Updated 5 years ago
• nextgenusfs / amptk
  AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
  ☆38Updated 10 months ago
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆51Updated 2 weeks ago
• BioSina / Panakeia
  Prokaryotic Pangenome Analysis
  ☆24Updated 2 years ago
• institut-de-genomique / NaS
  NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…
  ☆15Updated 7 years ago
• tseemann / cgmlst-dists
  🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables
  ☆25Updated 11 months ago
• drpowell / FriPan
  Interactive, web tool for exploring pan-genome of bacterial strains
  ☆43Updated last year
• Arcadia-Science / sourmashconsumr
  Working with the outputs of sourmash in R
  ☆22Updated 10 months ago
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 5 years ago
• tetramerFreqs / Binning
  Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…
  ☆17Updated 2 years ago
• fmaguire / arete
  ☆13Updated this week
• JosephCrispell / homoplasyFinder
  A tool to identify and annotate homoplasies on a phylogeny and sequence alignment
  ☆19Updated 3 years ago
• richardmleggett / MARTi
  Metagenomic Analysis in Real Time
  ☆17Updated last month
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆27Updated last year
• santeripuranen / SpydrPick
  SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.
  ☆13Updated 2 years ago