Fungal Genome Mapping Pipeline
☆19Jun 9, 2019Updated 7 years ago
Alternatives and similar repositories for FGMP
Users that are interested in FGMP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- The UltraPlexer is a kmer-based tool that allows assigning non-barcoded long-read sequences generated by the Oxford Nanopore Technology t…☆10Aug 16, 2021Updated 5 years ago
- MFannot is a program for the annotation of mitochondrial and plastid genomes☆25Oct 2, 2023Updated 3 years ago
- A universal genomic coordinate translator for comparative genomics☆12Jul 6, 2017Updated 9 years ago
- reference-based long read assemblies of bacterial genomes☆52Aug 9, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Jul 30, 2026Updated 3 months ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated this week
- Generates an NCBI .tbl file of annotations on a genome.☆69Mar 5, 2018Updated 8 years ago
- scripts to parse IrysView output☆11Jun 24, 2015Updated 11 years ago
- A comprehensive R package for label-free proteomics data analysis and modeling☆16May 7, 2026Updated 5 months ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 3 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆56Apr 1, 2026Updated 7 months ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 8 years ago
- Pipeline to run qiime2 with snakemake☆17Apr 17, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Contig Ploidy and Allele Dosage Estimation☆12Oct 30, 2015Updated 11 years ago
- 🪡Correct and scaffold assemblies using long reads☆62Apr 1, 2026Updated 7 months ago
- Portable WDL workflows for CZ ID production pipelines☆53Apr 23, 2026Updated 6 months ago
- A tool to identify, annotate and visualise splicing switch events from RNA-seq data☆14Aug 26, 2015Updated 11 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 5 months ago
- Quickly get coverage statistics given reads and an assembly☆18May 13, 2024Updated 2 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 11 years ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆78Nov 26, 2024Updated last year
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- taxonomic classifier based on the kraken2 algorithms and more☆46Dec 12, 2025Updated 10 months ago
- Find Co-Abundant Groups of Genes☆12Aug 3, 2020Updated 6 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆73Jun 4, 2026Updated 4 months ago
- Malaria Parasite Detection using Efficient Neural Ensembles. Malaria, a life threatening disease caused by the bite of the Anopheles mosq…☆11Dec 12, 2023Updated 2 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20May 25, 2017Updated 9 years ago
- Repetitive motif detection by Assembly of Repetitive K-mers. RepARK is free for academic and non-profit use. By downloading you agree wit…☆16Sep 16, 2024Updated 2 years ago
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 6 years ago
- ☆15Jul 17, 2019Updated 7 years ago
- Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format☆21Oct 15, 2010Updated 16 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Data point cloud separability analysis based on linear Fisher discriminants☆10Nov 22, 2019Updated 6 years ago
- nextflow parser☆10Feb 3, 2024Updated 2 years ago
- Code base for profiling highly replicated differential gene expression RNA-seq.☆11Dec 13, 2021Updated 4 years ago
- Breakpointer is a fast algorithm to locate breakpoints of structural variants from single-end reads produced by next-generation sequencin…☆10May 2, 2014Updated 12 years ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated 2 years ago
- ☆10Jul 4, 2019Updated 7 years ago
- Workshop: Using R/tidyverse to analyze & visualize gapminder/processed transcriptomics data!☆13Sep 12, 2025Updated last year