stajichlab / FGMPLinks
Fungal Genome Mapping Pipeline
☆18Updated 6 years ago
Alternatives and similar repositories for FGMP
Users that are interested in FGMP are comparing it to the libraries listed below
Sorting:
- Annotate your metagenome assemblies☆11Updated 7 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆24Updated 6 years ago
- Automatic Assembly For The Fungi☆26Updated this week
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Working with the outputs of sourmash in R☆28Updated 3 weeks ago
- Get microbial sequence data easier and faster☆28Updated 6 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Phylogenetics between and within hosts at once, all along the genome.☆50Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Tools for extracting individual genomes from metagenomes☆16Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆73Updated 5 months ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- Resolving Species Level Classification Using Emu☆14Updated last year
- Influenza genome analysis Nextflow workflow☆24Updated 2 weeks ago
- Genome wide orthology inference and dNdS estimation☆96Updated 5 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 7 months ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Validate and edit small eukaryotic genome assemblies☆32Updated 2 years ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 2 months ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆62Updated 2 months ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆15Updated 2 months ago
- TransAnnot - a fast transcriptome annotation pipeline☆20Updated last year
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 3 years ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Updated 6 years ago
- Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 2…☆10Updated 7 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 4 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 8 years ago