stajichlab / FGMPLinks
Fungal Genome Mapping Pipeline
☆18Updated 6 years ago
Alternatives and similar repositories for FGMP
Users that are interested in FGMP are comparing it to the libraries listed below
Sorting:
- Get microbial sequence data easier and faster☆28Updated 6 years ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Working with the outputs of sourmash in R☆27Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆24Updated 2 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 8 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Tools for extracting individual genomes from metagenomes☆16Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 years ago
- Automatic Assembly For The Fungi☆25Updated last month
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 2 months ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 10 months ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- BEAV: Bacterial Element Annotation reVamped☆72Updated 2 months ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Annotate your metagenome assemblies☆11Updated 7 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated 2 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆24Updated 3 months ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆13Updated 5 months ago
- Visualize whole genome alignments as linear maps☆73Updated 3 months ago
- rhierbaps: R implementation of hierBAPS☆35Updated 4 years ago
- A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies☆37Updated 2 years ago
- Strain Prediction and Analysis with Representative SEquence☆19Updated 11 months ago