stajichlab / FGMPLinks
Fungal Genome Mapping Pipeline
β19Updated 6 years ago
Alternatives and similar repositories for FGMP
Users that are interested in FGMP are comparing it to the libraries listed below
Sorting:
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenomeβ49Updated 2 years ago
- π π« Trim, circularise and orient long read bacterial genome assembliesβ25Updated 5 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBIβ29Updated 6 years ago
- Annotate your metagenome assembliesβ11Updated 7 years ago
- Working with the outputs of sourmash in Rβ27Updated last year
- TAXnomic Profile Aggregation and STAndardisationβ41Updated 2 weeks ago
- Get microbial sequence data easier and fasterβ28Updated 5 years ago
- Validate and edit small eukaryotic genome assembliesβ31Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strainsβ46Updated 2 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annβ¦β26Updated 2 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulationsβ12Updated 7 years ago
- Inferring global and local strict molecular clocks using root-to-tip regressionβ13Updated 3 months ago
- BEAV: Bacterial Element Annotation reVampedβ68Updated 2 weeks ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)β38Updated last year
- Horizontal Gene Transfer Detection by Mapping Sequencing Readsβ22Updated 8 years ago
- Assembly based core genome SNP alignments for bacteriaβ25Updated 5 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigsβ53Updated 2 months ago
- Surveillance of pathogens using population genomics and sequencingβ43Updated last month
- Automatic Assembly For The Fungiβ25Updated this week
- VIRULIGN: fast codon-correct alignment and annotation of viral genomesβ35Updated 4 years ago
- Tools for extracting individual genomes from metagenomesβ17Updated last year
- Phylogenetic maximum representation sampling: choosing most representative strains or taxaβ38Updated 4 months ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomesβ27Updated 8 years ago
- Detect contigs of complete circular genomesβ23Updated 6 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasetsβ29Updated last year
- Extract lineage CSVs from NCBI for use with sourmash lca.β29Updated last year
- Reference Phylogeny for Bacterial and Archaeal Genomesβ25Updated 3 weeks ago
- Utility program for extracting sequences from a fasta/fastq fileβ36Updated 8 months ago
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic dataβ17Updated last year
- CAMITAX: Taxon labels for microbial genomesβ30Updated last year