stajichlab / FGMP

Related projects ⓘ

Alternatives and complementary repositories for FGMP

• stajichlab / AAFTF
  Automatic Assembly For The Fungi
  ☆19Updated last year
• jessiewu / bacterialGWAS
  A pipeline for performing genome-wide association tests for bacterial genomes.
  ☆28Updated 6 years ago
• ktrappe / daisy
  Horizontal Gene Transfer Detection by Mapping Sequencing Reads
  ☆21Updated 7 years ago
• institut-de-genomique / NaS
  NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…
  ☆15Updated 7 years ago
• MadsAlbertsen / mmgenome
  Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes
  ☆27Updated 7 years ago
• naturalis / wgs2ncbi
  Toolkit for preparing genomes for submission to NCBI
  ☆29Updated 3 years ago
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 5 years ago
• flass / pantagruel
  a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome
  ☆46Updated 2 years ago
• cboursnell / transfuse
  Merge transcriptome assemblies
  ☆30Updated 8 years ago
• blaxterlab / blobology
  Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …
  ☆46Updated 2 years ago
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆52Updated 2 months ago
• z0on / GO_MWU
  Rank-based Gene Ontology analysis of gene expression data
  ☆39Updated last year
• josephpetrone / RESCUE
  Resolving Species Level Classification Using Emu
  ☆12Updated 5 months ago
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆45Updated last year
• ibest / ARC
  Assembly by Reduced Complexity (ARC)
  ☆41Updated 8 years ago
• KasperSkytte / mmgenome2
  Tools for extracting individual genomes from metagenomes
  ☆17Updated 11 months ago
• schultzm / entrez_direct_tut
  Tutorial on using E-utilities
  ☆19Updated 3 years ago
• nextgenusfs / amptk
  AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
  ☆38Updated last year
• johnomics / tapestry
  Validate and edit small eukaryotic genome assemblies
  ☆31Updated last year
• lmlui / Jorg
  MAG Circularization Method
  ☆33Updated 2 years ago
• weisberglab / beav
  BEAV: Bacterial Element Annotation reVamped
  ☆59Updated 3 weeks ago
• hsgweon / pipits
  Automated pipeline for analyses of fungal ITS from the Illumina
  ☆30Updated 3 months ago
• jonas-fuchs / BAMdash
  create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
  ☆38Updated 3 months ago
• edamame-course / Metagenome
  ☆23Updated 6 years ago
• GATB / gatb-minia-pipeline
  GATB Minia assembly pipeline
  ☆29Updated last year
• evolbioinfo / booster
  ☆27Updated 4 years ago
• sanger-pathogens / assembly_improvement
  Improve the quality of a denovo assembly by scaffolding and gap filling
  ☆56Updated 3 years ago
• zheminzhou / SPARSE
  Strain Prediction and Analysis with Representative SEquence
  ☆18Updated 2 weeks ago
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆27Updated 3 months ago
• linsalrob / partie
  PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…
  ☆25Updated last year