(a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join
☆10Apr 29, 2021Updated 5 years ago
Alternatives and similar repositories for apc
Users that are interested in apc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline to generate NGS reads from a phylogeny☆39Sep 13, 2022Updated 3 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- MUMmer3☆17Jan 12, 2022Updated 4 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated 2 years ago
- libstrbuf: A powerful string library for C☆17Oct 15, 2016Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 2…☆10Jan 12, 2019Updated 7 years ago
- C++ wrapper to tabix indexer☆17Jun 27, 2025Updated last year
- Very very long reads, indeed☆13Apr 30, 2017Updated 9 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆50Jan 14, 2026Updated 6 months ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Oct 11, 2018Updated 7 years ago
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 6 years ago
- An MPI Toolkit for large-scale genomic analysis☆16Feb 29, 2016Updated 10 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Jan 19, 2021Updated 5 years ago
- Tools for extracting individual genomes from metagenomes☆16Dec 4, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- Filter of Pairwise Alignement☆45Jan 31, 2022Updated 4 years ago
- reference free variant assembly☆34Jul 14, 2023Updated 3 years ago
- ☆11Jul 16, 2018Updated 8 years ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- ☆17Jun 5, 2026Updated last month
- Find Unique genomic Regions☆33Jun 25, 2026Updated 3 weeks ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Aug 23, 2019Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- Simple tool to verticalize text delimited files.☆37May 6, 2024Updated 2 years ago
- ☆18Mar 5, 2017Updated 9 years ago
- Convenience function for quick and dirty data analysis☆69Oct 30, 2017Updated 8 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- Manipulate FASTA files☆29Aug 26, 2014Updated 11 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Jun 26, 2018Updated 8 years ago
- High throughput sequencing analysis tools☆30Apr 21, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆11Dec 24, 2024Updated last year
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 7 months ago
- Parallel implementation of the LAST aligner☆18Nov 27, 2016Updated 9 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- multi-tool QC for minion data☆10May 28, 2018Updated 8 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆124Jun 2, 2026Updated last month