jfass / apcLinks
(a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join
☆11Updated 4 years ago
Alternatives and similar repositories for apc
Users that are interested in apc are comparing it to the libraries listed below
Sorting:
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- De novo VIral Genome Annotator☆21Updated 9 months ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 6 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- metagenome population recombination rate estimation pipeline☆12Updated last month
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- ☆22Updated 2 years ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 7 months ago
- ☆20Updated last year
- software to identify primers that can distinguish genomes☆21Updated 5 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes☆10Updated last week
- Quickly get coverage statistics given reads and an assembly☆13Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated this week
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 3 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated last month
- ☆11Updated last year
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- ☆15Updated 11 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year
- Resolving Species Level Classification Using Emu☆13Updated last year
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last week
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- Paint genomes with taxa-specific k-mer probabilities☆8Updated 7 years ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago