RNA-Skim: a rapid method for RNA-Seq quantification at transcript level
☆19Sep 3, 2017Updated 8 years ago
Alternatives and similar repositories for RNASkim
Users that are interested in RNASkim are comparing it to the libraries listed below
Sorting:
- Demonstrating the PRoot program☆11Jul 29, 2016Updated 9 years ago
- Naive PCA for genotype data☆10Jul 27, 2016Updated 9 years ago
- python stuff I use☆20Feb 16, 2026Updated last month
- scripts to parse IrysView output☆11Jun 24, 2015Updated 10 years ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 9 months ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆30Mar 31, 2015Updated 10 years ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- ☆11Jul 6, 2023Updated 2 years ago
- This repo is DEPRECATED. Please use minimap2, the successor of minimap.☆106Sep 20, 2017Updated 8 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Jun 6, 2019Updated 6 years ago
- Small utility to quickly find size and GC content of a fasta file. Can also extract sequence. Who doesn't like QUICK and DIRTY!☆13Aug 27, 2018Updated 7 years ago
- A workflow assembler for cancer genome analytics and informatics☆19Nov 16, 2016Updated 9 years ago
- Manipulate FASTA files☆29Aug 26, 2014Updated 11 years ago
- Using kallisto for metagenomic analysis☆49Jan 12, 2017Updated 9 years ago
- An implementation of the Azure Active Directory OAuth 2.0 flow.☆10Feb 10, 2017Updated 9 years ago
- RNA-Seq☆24Aug 29, 2018Updated 7 years ago
- Cleavage of polypeptide sequences☆12Oct 14, 2025Updated 5 months ago
- The gkno launcher for executing tools or pipelines☆31Jan 17, 2017Updated 9 years ago
- A box of genomics tools☆22Aug 26, 2020Updated 5 years ago
- Some sleuth walkthroughs to help you get started☆10Jul 26, 2018Updated 7 years ago
- A basic union-find data structure for node.js☆27Nov 26, 2017Updated 8 years ago
- Fungal Genome Mapping Pipeline☆18Jun 9, 2019Updated 6 years ago
- Make Pseudo-Reference Genome from VCF/BCF☆14Oct 5, 2020Updated 5 years ago
- genomic alignment similarity search tool☆18May 15, 2025Updated 10 months ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Apr 14, 2019Updated 6 years ago
- home of the bear's lair☆10May 19, 2017Updated 8 years ago
- Homebrew/science is deprecated☆11Jan 2, 2018Updated 8 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 4 years ago
- Easily create reusable command line scripts with R☆13Mar 31, 2021Updated 4 years ago
- ☆18Apr 10, 2015Updated 10 years ago
- Bacterial phylogenetics in BEAST 2.☆18Mar 30, 2023Updated 2 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆22May 9, 2023Updated 2 years ago
- ☆45Dec 11, 2016Updated 9 years ago
- ☆33Sep 25, 2019Updated 6 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 4 years ago
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Mar 14, 2019Updated 7 years ago
- Simple library for reading Adobe Glyph Bitmap Distribution font files☆15Mar 10, 2017Updated 9 years ago
- Simple convertor from bam to FASTQ☆26Jun 30, 2015Updated 10 years ago
- open source high throughput homogeneous liquid handler ( automated pipette )☆17Sep 20, 2011Updated 14 years ago