alexkychen / assignPOP

Related projects ⓘ

Alternatives and complementary repositories for assignPOP

• ropensci / phylotaR
  An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
  ☆23Updated 4 months ago
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆35Updated 10 months ago
• NovembreLab / PCAviz
  An R package to help in plotting PCA results nicely.
  ☆13Updated 4 years ago
• weissmanlab / magic
  Minimal Assumption Genomic Inference of Coalescence
  ☆14Updated last year
• vsbuffalo / msr
  Process MS results in R, in a tidy way
  ☆17Updated 6 years ago
• EricArcher / strataG
  strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
  ☆25Updated 6 months ago
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆68Updated 6 months ago
• lvclark / polysat
  polysat 1.7: tools for polyploid microsatellite analysis
  ☆11Updated 2 years ago
• grunwaldlab / analysis_of_microbiome_community_data_in_r
  This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://gr…
  ☆17Updated 11 months ago
• sa-lee / starmie
  starmie: plotting and inference for population structure models
  ☆12Updated 6 years ago
• laurabenestan / RDA_outlier
  Redundancy Analysis allowing to both estimate the percent of genomic variation explained by each variable as well as to detect the putati…
  ☆8Updated 4 years ago
• lvclark / polyRAD
  Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
  ☆27Updated 11 months ago
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆39Updated last month
• liamrevell / learnPopGen
  initial commit
  ☆26Updated last year
• ropensci / babette
  babette is an R package to work with BEAST2
  ☆44Updated 4 months ago
• stevemussmann / BayesAss3-SNPs
  Modification of BayesAss 3.0.4 to allow handling of large SNP datasets
  ☆15Updated 2 years ago
• StoreyLab / popkin
  R package to estimate kinship and FST from SNP data
  ☆19Updated last month
• kkeenan02 / diveRsity
  diveRsity: A comprehensive, general purpose population genetics analysis package.
  ☆22Updated 6 years ago
• cjbattey / driftR
  population genetic simulations with R and Shiny
  ☆27Updated 2 weeks ago
• green-striped-gecko / dartR
  Importing and Analysing DArT type snp and silicodart data
  ☆31Updated 2 months ago
• fmichonneau / phylobase
  An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data
  ☆17Updated 9 months ago
• gbradburd / SpaceMix
  ☆29Updated 2 years ago
• j-a-thia / genomalicious
  A smorgasbord of R functions for population genomic analyses
  ☆17Updated last month
• emvolz-phylodynamics / treestructure
  ☆17Updated 6 months ago
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆24Updated 7 months ago
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆28Updated 6 years ago
• tbradley1013 / tree-subset-shiny
  This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees
  ☆14Updated 5 years ago
• bodkan / admixr
  An R package for reproducible and automated ADMIXTOOLS analyses
  ☆28Updated 6 months ago
• mwpennell / geiger-v2
  A suite of methods and models for studying evolutionary radiations
  ☆22Updated last year
• ropensci / chromer
  package for interacting with the chromosome counts database (CCDB) at https://taux.evolseq.net/CCDB_web/
  ☆12Updated 7 months ago