alexkychen / assignPOPLinks
Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution. 2018;9:439–446.
☆16Updated 2 months ago
Alternatives and similar repositories for assignPOP
Users that are interested in assignPOP are comparing it to the libraries listed below
Sorting:
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆71Updated 2 months ago
- Process MS results in R, in a tidy way☆16Updated 7 years ago
- strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.☆26Updated last month
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆25Updated 3 months ago
- An R package to help in plotting PCA results nicely.☆12Updated 5 years ago
- polysat 1.7: tools for polyploid microsatellite analysis☆12Updated 10 months ago
- population genetic simulations with R and Shiny☆28Updated last year
- An R package for the spatial analysis of population genetic data.☆20Updated 4 months ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://gr…☆16Updated last year
- babette is an R package to work with BEAST2☆46Updated 3 weeks ago
- diveRsity: A comprehensive, general purpose population genetics analysis package.☆26Updated 7 years ago
- R package to estimate kinship and FST from SNP data☆21Updated last year
- Phylogenetic plots for R and ggplot☆27Updated 13 years ago
- ☆36Updated last year
- ARCHIVED Access sequences from the 1000 Plant Initiative (1KP)☆13Updated last week
- A suite of methods and models for studying evolutionary radiations☆24Updated 2 years ago
- RADseq Data Exploration, Manipulation and Visualization using R☆59Updated 2 months ago
- the hierfstat package☆25Updated 11 months ago
- An Amazing Shiny App☆17Updated 4 years ago
- Analysis scripts from the paper "Eight thousand years of natural selection in Europe".☆11Updated 10 years ago
- phylogenetic networks using ggplot2 and ggtree☆13Updated 10 months ago
- Minimal Assumption Genomic Inference of Coalescence☆14Updated 2 years ago
- Performs MCMCglmm on multiple phylogenetic trees☆12Updated 7 months ago
- initial commit☆26Updated 2 years ago
- An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data☆19Updated last year
- method for modeling continuous and discrete population genetic structure☆36Updated last year
- R package: Evolutionary biology in R☆19Updated last month
- Crash Course on Approximate Bayesian Computation in Population Genetics☆11Updated 3 years ago
- A textbook on population genetics☆18Updated 11 months ago