Alternatives and similar repositories for assignPOP:

Users that are interested in assignPOP are comparing it to the libraries listed below

• vsbuffalo / msr
  Process MS results in R, in a tidy way
  ☆17Updated 6 years ago
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆35Updated last year
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆40Updated 7 months ago
• laurabenestan / RDA_outlier
  Redundancy Analysis allowing to both estimate the percent of genomic variation explained by each variable as well as to detect the putati…
  ☆8Updated 5 years ago
• EricArcher / strataG
  strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
  ☆25Updated this week
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆70Updated 11 months ago
• NovembreLab / PCAviz
  An R package to help in plotting PCA results nicely.
  ☆13Updated 5 years ago
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 2 years ago
• dyerlab / applied_population_genetics
  A textbook on population genetics
  ☆18Updated 4 months ago
• lvclark / polyRAD
  Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
  ☆30Updated last month
• ropensci / phylotaR
  An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
  ☆24Updated 9 months ago
• cjbattey / driftR
  population genetic simulations with R and Shiny
  ☆27Updated 6 months ago
• thierrygosselin / radiator
  RADseq Data Exploration, Manipulation and Visualization using R
  ☆59Updated 3 weeks ago
• lvclark / polysat
  polysat 1.7: tools for polyploid microsatellite analysis
  ☆12Updated 4 months ago
• weissmanlab / magic
  Minimal Assumption Genomic Inference of Coalescence
  ☆14Updated last year
• kkeenan02 / diveRsity
  diveRsity: A comprehensive, general purpose population genetics analysis package.
  ☆25Updated 7 years ago
• mathii / europe_selection
  Analysis scripts from the paper "Eight thousand years of natural selection in Europe".
  ☆10Updated 9 years ago
• sa-lee / starmie
  starmie: plotting and inference for population structure models
  ☆12Updated 6 years ago
• rystanley / genepopedit
  Simple and flexible manipulation of genomic data.
  ☆16Updated 2 weeks ago
• kjgilbert / QstFstComp
  R Package for performing Qst-Fst analyses
  ☆21Updated 7 years ago
• jgx65 / hierfstat
  the hierfstat package
  ☆24Updated 5 months ago
• martinsikora / admixr
  an R package for admixture analyses
  ☆17Updated 9 years ago
• mwpennell / geiger-v2
  A suite of methods and models for studying evolutionary radiations
  ☆23Updated 2 years ago
• gjuggler / ggphylo
  Phylogenetic plots for R and ggplot
  ☆27Updated 12 years ago
• bodkan / admixr
  An R package for reproducible and automated ADMIXTOOLS analyses
  ☆29Updated 2 months ago
• ropensci / chromer
  package for interacting with the chromosome counts database (CCDB) at https://taux.evolseq.net/CCDB_web/
  ☆12Updated last year
• ropensci / babette
  babette is an R package to work with BEAST2
  ☆45Updated last week
• thierrygosselin / stackr
  stackr: an R package to run stacks software pipeline
  ☆29Updated last month
• tbradley1013 / tree-subset-shiny
  This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees
  ☆15Updated 6 years ago
• ropensci / beastier
  R package to run BEAST2
  ☆11Updated this week