alexkychen / assignPOPLinks
Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution. 2018;9:439β446.
β16Updated last year
Alternatives and similar repositories for assignPOP
Users that are interested in assignPOP are comparing it to the libraries listed below
Sorting:
- πΆ An R package for genetic analysis of populations with mixed (clonal/sexual) reproductionβ71Updated last month
- strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.β26Updated 2 weeks ago
- diveRsity: A comprehensive, general purpose population genetics analysis package.β26Updated 7 years ago
- An R package to help in plotting PCA results nicely.β13Updated 5 years ago
- RADseq Data Exploration, Manipulation and Visualization using Rβ59Updated last month
- Process MS results in R, in a tidy wayβ17Updated 7 years ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in Rβ24Updated last week
- This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://grβ¦β16Updated last year
- polysat 1.7: tools for polyploid microsatellite analysisβ12Updated 7 months ago
- babette is an R package to work with BEAST2β46Updated this week
- R package to run BEAST2β11Updated 2 months ago
- population genetic simulations with R and Shinyβ28Updated 9 months ago
- R package to estimate kinship and FST from SNP dataβ21Updated 10 months ago
- R package: Evolutionary biology in Rβ17Updated last year
- stackr: an R package to run stacks software pipelineβ29Updated 4 months ago
- Analysis scripts from the paper "Eight thousand years of natural selection in Europe".β10Updated 9 years ago
- the hierfstat packageβ25Updated 8 months ago
- method for modeling continuous and discrete population genetic structureβ36Updated last year
- Access sequences from the 1000 Plant Initiative (1KP)β13Updated 2 years ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic treesβ15Updated 6 years ago
- package for interacting with the chromosome counts database (CCDB) at https://taux.evolseq.net/CCDB_web/β12Updated last week
- β37Updated 9 months ago
- Redundancy Analysis allowing to both estimate the percent of genomic variation explained by each variable as well as to detect the putatiβ¦β8Updated 5 years ago
- Importing and Analysing DArT type snp and silicodart dataβ34Updated 4 months ago
- Phylogenetic plots for R and ggplotβ27Updated 12 years ago
- An R package for the spatial analysis of population genetic data.β19Updated last month
- Minimal Assumption Genomic Inference of Coalescenceβ14Updated 2 years ago
- DPPDIVβ12Updated 5 years ago
- An R package for reproducible and automated ADMIXTOOLS analysesβ33Updated 5 months ago
- A suite of methods and models for studying evolutionary radiationsβ24Updated 2 years ago