thegenemyers / DAMAPPERLinks
Long read to reference genome mapping tool
☆13Updated last year
Alternatives and similar repositories for DAMAPPER
Users that are interested in DAMAPPER are comparing it to the libraries listed below
Sorting:
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 9 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Hidden Markov Model based Copy number caller☆20Updated 10 months ago
- ☆12Updated last week
- Long Approximate Matches-based Split Aligner☆13Updated 8 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆10Updated 6 months ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated last year
- ☆24Updated 3 weeks ago
- Importing vg json graphs to Python data structures.☆11Updated 4 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- Python bindings to minimap2☆16Updated 8 years ago
- ☆16Updated 3 years ago
- Indel-aware consensus for aligned BAM☆21Updated last month
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Updated 8 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 5 months ago
- ☆10Updated 5 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10Updated 4 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- GBWT-based handle graph☆31Updated 2 months ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 6 years ago
- ☆28Updated 5 months ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 5 years ago
- ☆14Updated 5 years ago
- de Bruijn Graph-based read aligner☆33Updated 7 years ago