Long read to reference genome mapping tool
☆13Mar 14, 2024Updated last year
Alternatives and similar repositories for DAMAPPER
Users that are interested in DAMAPPER are comparing it to the libraries listed below
Sorting:
- Module to determine where repeats are and make soft-masks of said☆10Mar 14, 2024Updated last year
- Alignment-based Scrubbing pipeline☆21Mar 14, 2024Updated last year
- The Dagstuhl Format for Assembly☆13Oct 16, 2017Updated 8 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 4 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Mar 3, 2025Updated last year
- semi-reference-based short read compression☆11Mar 5, 2019Updated 6 years ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 7 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Identification of structural variations☆12Jul 22, 2022Updated 3 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- Lightweight resources assembly algorithm☆19May 17, 2017Updated 8 years ago
- Find Unique genomic Regions☆32Feb 25, 2026Updated last week
- ☆26Aug 10, 2021Updated 4 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- ☆16Jan 5, 2018Updated 8 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated last year
- Collection of utilities for working with PacBio-based assemblies☆13Apr 2, 2023Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Jul 24, 2025Updated 7 months ago
- Find all significant local alignments between reads☆141Jul 3, 2024Updated last year
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 5 years ago
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Sep 12, 2018Updated 7 years ago
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 5 years ago
- 10x Genomics Reads Simulator☆46Dec 26, 2023Updated 2 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆54Feb 6, 2024Updated 2 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Feb 17, 2019Updated 7 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Dec 13, 2024Updated last year
- A tool for recovering synteny blocks from multiple alignment☆32Oct 18, 2021Updated 4 years ago
- Making diploid assembly becomes common practice for genomic study☆30Oct 2, 2017Updated 8 years ago
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆52May 16, 2022Updated 3 years ago
- The Dazzler Data Base☆36Feb 17, 2025Updated last year
- High-performance error correction for Illumina resequencing data☆74May 31, 2016Updated 9 years ago
- 🪡Correct and scaffold assemblies using long reads☆57Sep 4, 2025Updated 6 months ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 5 years ago
- Parallel implementation of the LAST aligner☆18Nov 27, 2016Updated 9 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Aug 18, 2020Updated 5 years ago
- Population Reference Graphs for the HLA and MHC.☆35Dec 18, 2018Updated 7 years ago