Northern Arizona SNP Pipeline
☆20Oct 29, 2024Updated last year
Alternatives and similar repositories for NASP
Users that are interested in NASP are comparing it to the libraries listed below
Sorting:
- Whole genome focused array SNP typer☆14Feb 2, 2026Updated 3 weeks ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆66May 5, 2023Updated 2 years ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Dec 24, 2025Updated 2 months ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Jan 18, 2016Updated 10 years ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Feb 15, 2026Updated 2 weeks ago
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆14Mar 15, 2023Updated 2 years ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- ☆15Jun 27, 2024Updated last year
- CFSAN Shigella Typing Pipeline☆15Jul 6, 2023Updated 2 years ago
- An easy way of MLSTyping your genomes in R.☆19Dec 21, 2020Updated 5 years ago
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated 11 months ago
- ☆13May 27, 2025Updated 9 months ago
- mytax is a tool for building custom taxonomies, useful for nucleotide sequence classification☆13Oct 9, 2025Updated 4 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆152Oct 2, 2025Updated 4 months ago
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated last year
- Scripts and instructions for submitting annotated microbial genomes to Genbank☆15Feb 23, 2016Updated 10 years ago
- Python tool for the analysis and visualization of mobile genetic elements☆20May 26, 2025Updated 9 months ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆22May 8, 2024Updated last year
- Bacterial phylogenetics in BEAST 2.☆18Mar 30, 2023Updated 2 years ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- Detecting recombination of viral lineages☆11Dec 23, 2025Updated 2 months ago
- Predict plasmids from uncorrected long read data☆41Oct 31, 2025Updated 4 months ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63May 18, 2020Updated 5 years ago
- A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.☆31Feb 2, 2026Updated 3 weeks ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 8 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Feb 5, 2026Updated 3 weeks ago
- Set of tools for viral metagenomics.☆14Jan 21, 2026Updated last month
- Annotate your metagenome assemblies☆11Jul 19, 2018Updated 7 years ago
- ☆11Mar 10, 2024Updated last year
- ☆10Apr 16, 2025Updated 10 months ago
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 4 years ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆12Jun 30, 2023Updated 2 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated 3 weeks ago
- The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute☆32Mar 19, 2021Updated 4 years ago
- High-quality Nanopore-only genome polisher☆69Aug 16, 2024Updated last year
- ☆43Apr 2, 2024Updated last year