TGenNorth / NASPLinks
Northern Arizona SNP Pipeline
☆19Updated 8 months ago
Alternatives and similar repositories for NASP
Users that are interested in NASP are comparing it to the libraries listed below
Sorting:
- Whole genome focused array SNP typer☆13Updated 3 weeks ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- C++ tools for NCBI taxonomy tasks☆11Updated 3 weeks ago
- De novo VIral Genome Annotator☆23Updated 10 months ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- Lowest Common Ancestor from a SAM/BAM/CRAM alignment file☆9Updated 10 months ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 7 months ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- ☆19Updated 8 years ago
- software to identify primers that can distinguish genomes☆21Updated 5 months ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Light version blobtools package - NO LONGER MAINTAINED! DO NOT USE!☆8Updated 9 years ago
- Read contamination removal☆25Updated last year
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- ☆11Updated last year
- Annotate your metagenome assemblies☆11Updated 6 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Finding prophage regions in bacterial genomes using brute force☆22Updated 2 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated last year
- Raspir, the rare species identifier☆11Updated last year
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Updated 6 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 6 months ago