jdrudolph / uniprotLinks
command-line and python interface to the uniprot database
☆10Updated 10 years ago
Alternatives and similar repositories for uniprot
Users that are interested in uniprot are comparing it to the libraries listed below
Sorting:
- Library for visualising genomic features in Python.☆15Updated 8 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Updated 7 years ago
- Luslab nextflow modules☆14Updated 4 years ago
- Reproducible GSEA Benchmarking☆13Updated 2 months ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated 2 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated 4 years ago
- renders a KEGGML file and displays a KEGG pathway☆10Updated 9 years ago
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Updated 2 years ago
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Updated 4 years ago
- Build an index for your BAM Index (BAI)☆17Updated 10 years ago
- Browser-based Interactive Phylogeographic Animations☆20Updated 8 years ago
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated last year
- ☆28Updated 7 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Updated 9 years ago
- ☆21Updated 9 years ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Updated 6 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 8 years ago
- A Python library to work with high-throughput sequencing data in the context of data integration☆14Updated 8 years ago
- iDEP: integrated Differential Expression & Pathway analysis☆14Updated 6 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- Genomics Research Container Architecture☆48Updated 6 years ago
- UChicago BSD Quantitative Bootcamp 2020☆11Updated 4 years ago
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Updated 2 weeks ago
- Align sequences and then parse features.☆17Updated 2 months ago
- Easily download genomes and build BLAST/Bowtie indexes in Python☆22Updated 3 years ago
- A flexible python program for generating figures from regions of the genome.☆13Updated 6 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11Updated 8 years ago
- Python-based framework for computational immunomics☆40Updated 4 years ago
- TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA featur…☆15Updated 3 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 7 years ago