☆15Jul 17, 2019Updated 6 years ago
Alternatives and similar repositories for selection
Users that are interested in selection are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A domain-specific language that allows the expression or protein interactions that can be used to build executable models.☆23Dec 13, 2022Updated 3 years ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 7 years ago
- Utilities for analyzing next generation sequencing data☆17Sep 28, 2018Updated 7 years ago
- A statistical framework for reference-free inference of archaic local ancestry☆15Nov 8, 2019Updated 6 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Maximum a posteriori estimate of contamination for ancient samples☆24Nov 4, 2025Updated 7 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- command-line tools for the management of genotype likelihoods and allele counts☆30Feb 12, 2024Updated 2 years ago
- Work for the tree sequence inference paper.☆23Oct 19, 2020Updated 5 years ago
- fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations☆28Oct 7, 2021Updated 4 years ago
- A general-purpose forward-time population genetics simulation environment.☆36Feb 4, 2026Updated 4 months ago
- Faster multispecies coalescent inference using multilocus data☆15Aug 13, 2023Updated 2 years ago
- forward-time population genetic simulation in python☆18Mar 19, 2017Updated 9 years ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Feb 15, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 6 years ago
- Snakemake pipeline for benchmarking read mappers☆16Dec 11, 2023Updated 2 years ago
- A procedure to find Fst outliers based on an inferred distribution of neutral Fst☆20Aug 26, 2019Updated 6 years ago
- A package for population structure inference from RAD-seq data☆35May 14, 2021Updated 5 years ago
- AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestrie…☆11Jun 29, 2023Updated 2 years ago
- Parsimony on tree sequences☆13Jun 27, 2025Updated 11 months ago
- Repo to analyze population genetic data with many different methods☆15Oct 23, 2019Updated 6 years ago
- A Framework for Coalescent Simulation in R☆24Mar 20, 2024Updated 2 years ago
- population genetic simulations with R and Shiny☆28Nov 3, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Process MS results in R, in a tidy way☆16May 25, 2018Updated 8 years ago
- Module for analysing admixture graphs☆29Apr 30, 2018Updated 8 years ago
- Code repository for the HAYSTAC pipeline☆15Oct 25, 2024Updated last year
- Time-stratified f-statistics☆16Aug 1, 2025Updated 10 months ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 9 years ago
- TESS3 is a fast and efficient program for estimating spatial population structure based on geographically constrained non-negative matrix…☆24Jun 21, 2023Updated 2 years ago
- A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.☆16Jul 7, 2022Updated 3 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆20Apr 9, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A merged read deduplication tool capable to perform merged read deduplication on single end data.☆13Sep 4, 2024Updated last year
- R Functions to calculate power of GWAS studies for a single associated SNP, under various parameters. Suitable for classical (i.e. single…☆22Jul 19, 2018Updated 7 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆58Aug 9, 2015Updated 10 years ago
- Tools for describing and manipulating demographic models.☆19Mar 30, 2026Updated 2 months ago
- How much of the world is woody?☆20Nov 8, 2016Updated 9 years ago
- Handling, Visualisation and Analysis of Epidemiological Contacts☆18Apr 17, 2025Updated last year
- ☆17Apr 1, 2017Updated 9 years ago