tseemann / mokkaLinks
Annotate your metagenome assemblies
☆11Updated 7 years ago
Alternatives and similar repositories for mokka
Users that are interested in mokka are comparing it to the libraries listed below
Sorting:
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- ☆14Updated last month
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 weeks ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 10 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Resolving Species Level Classification Using Emu☆14Updated last year
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆15Updated 3 years ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 2 months ago
- Confirming specific taxonomic groups within your samples.☆19Updated 5 years ago
- Get microbial sequence data easier and faster☆28Updated 6 years ago
- Intra-species bacterial contamination detection☆25Updated 11 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated last week
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Updated 2 years ago
- Read contamination removal☆25Updated 2 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Updated 2 years ago
- ☆22Updated 2 years ago
- MAG Circularization Method☆32Updated 2 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 9 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆24Updated 6 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Updated last year
- Metagenomic Analysis in Real Time☆29Updated 2 months ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆15Updated 2 months ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Fungal Genome Mapping Pipeline☆18Updated 6 years ago
- CFSAN Shigella Typing Pipeline☆15Updated 2 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Updated 7 years ago
- Influenza genome analysis Nextflow workflow☆24Updated this week