tseemann / mokkaLinks
Annotate your metagenome assemblies
☆11Updated 6 years ago
Alternatives and similar repositories for mokka
Users that are interested in mokka are comparing it to the libraries listed below
Sorting:
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- ☆22Updated 2 years ago
- Detect contigs of complete circular genomes☆23Updated 5 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆24Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago
- Read contamination removal☆25Updated last year
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Northern Arizona SNP Pipeline☆19Updated 7 months ago
- software to identify primers that can distinguish genomes☆21Updated 4 months ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 10 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 2 months ago
- ☆14Updated last year
- Strain Prediction and Analysis with Representative SEquence☆19Updated 5 months ago
- Surveillance of pathogens using population genomics and sequencing☆24Updated 2 weeks ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Updated 8 months ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- Bacterial taxonomy construction and evaluation in R☆13Updated last year
- MAG Circularization Method☆33Updated 3 years ago