Annotate your metagenome assemblies
☆11Jul 19, 2018Updated 8 years ago
Alternatives and similar repositories for mokka
Users that are interested in mokka are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Assembly based core genome SNP alignments for bacteria☆25Oct 23, 2019Updated 6 years ago
- Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data☆16Jan 31, 2025Updated last year
- QC cutoffs for different genomes.☆18May 28, 2026Updated 3 months ago
- This project contains simple methods to measure sample relatedness and identify potential swaps and contamination☆10Jan 8, 2016Updated 10 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Apr 1, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.☆28Feb 14, 2023Updated 3 years ago
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- CAMITAX: Taxon labels for microbial genomes☆33Dec 14, 2023Updated 2 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 10 years ago
- Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 2…☆10Jan 12, 2019Updated 7 years ago
- Deep learning library for biological sequences. Extension of Fastai and Pytorch.☆39Jul 17, 2026Updated 2 months ago
- Rapid determination of appropriate reference genomes.☆104Jan 22, 2025Updated last year
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆11Sep 22, 2020Updated 6 years ago
- Demonstrating the PRoot program☆11Jul 29, 2016Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Evaluating Nanopore-based bacterial variant calling☆23Jul 23, 2025Updated last year
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- Digital Database of Microbial Phenotypes. Like an online Bergey's Manual.☆14Mar 1, 2012Updated 14 years ago
- Scripts and instructions for submitting annotated microbial genomes to Genbank☆16Feb 23, 2016Updated 10 years ago
- µbinfie blog☆19Jul 21, 2025Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated 2 years ago
- Reactome Pathway Analysis☆46Updated this week
- PacBio hybrid error correction through iterative short read consensus☆60May 17, 2019Updated 7 years ago
- Detect contigs of complete circular genomes☆23Jun 6, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 5 years ago
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆15Dec 5, 2025Updated 9 months ago
- Python package for common tasks in bioinformatic.☆12Sep 24, 2025Updated 11 months ago
- ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data☆11Sep 6, 2022Updated 4 years ago
- VETA - A simple tool do evaluate variant predictors☆11Jun 17, 2024Updated 2 years ago
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- Calculate assocations between genes and traits☆32Mar 10, 2025Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Dec 4, 2018Updated 7 years ago
- Assign taxonomic ranks based on evolutionary divergence.☆24Mar 3, 2026Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆14Jan 6, 2023Updated 3 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Aug 23, 2019Updated 7 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 7 years ago
- NGS QC Toolkit: a toolkit for quality check and filtering of next generation sequencing data of Roche and Illumina technology (http://www…☆17Mar 19, 2021Updated 5 years ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated 2 months ago
- A library for working with phylogenetic and population genetic data.☆67Jul 18, 2026Updated 2 months ago
- A repository of notes, code, slides, and resources for the MetaPathways tutorial being held February 2014 at UBC.☆18Mar 9, 2015Updated 11 years ago