tseemann / mokkaLinks
Annotate your metagenome assemblies
☆11Updated 7 years ago
Alternatives and similar repositories for mokka
Users that are interested in mokka are comparing it to the libraries listed below
Sorting:
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- ☆14Updated last year
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 5 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Intra-species bacterial contamination detection☆25Updated 5 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated last year
- Resolving Species Level Classification Using Emu☆14Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- ☆22Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆24Updated last year
- NCBI Pathogen Detection Portal toolkit☆11Updated last year
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated last week
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 8 months ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆14Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- ☆27Updated 2 months ago
- MAG Circularization Method☆33Updated 3 years ago
- CFSAN Shigella Typing Pipeline☆14Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Recombination-free trees☆59Updated 4 months ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Updated 6 years ago