Alternatives and similar repositories for Koverage

Users that are interested in Koverage are comparing it to the libraries listed below

• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆25Updated last month
• martinghunt / ziplign
  Simple-to-use interactive comparison of two bacterial genomes
  ☆18Updated this week
• phiweger / ideel
  Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
  ☆15Updated 7 years ago
• niemasd / ViralConsensus
  Fast viral consensus genome reconstruction
  ☆25Updated 3 months ago
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆62Updated this week
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆35Updated 4 months ago
• stjacqrm / centroid
  tool to determine optimal refrerence genome given a set of fasta files
  ☆15Updated 2 years ago
• jonas-fuchs / virHEAT
  Visualize microbial evolution at the SNP level!
  ☆15Updated 2 months ago
• lmc297 / BTyper3
  In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data
  ☆21Updated last year
• esteinig / sketchy
  Genomic neighbor typing of bacterial pathogens using MinHash
  ☆43Updated 2 years ago
• FOI-Bioinformatics / nanometa_live
  A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…
  ☆18Updated last year
• JensUweUlrich / Taxor
  Fast and space-efficient taxonomic classification of long reads
  ☆43Updated 2 months ago
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆55Updated 6 months ago
• dib-lab / charcoal
  Remove contaminated contigs from genomes using k-mers and taxonomies.
  ☆59Updated last year
• mjsull / chromatiblock
  Colinear block visualisation tool
  ☆31Updated last year
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆20Updated this week
• tlemane / kmdiff
  Differential k-mer analysis
  ☆37Updated last year
• tseemann / ekidna
  Assembly based core genome SNP alignments for bacteria
  ☆25Updated 6 years ago
• sid-krish / rhometa
  metagenome population recombination rate estimation pipeline
  ☆12Updated this week
• piyuranjan / SNIKT
  Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…
  ☆17Updated 2 years ago
• Danderson123 / Amira
  A tool to detect acquired AMR genes directly from long read sequencing data.
  ☆17Updated 2 months ago
• tseemann / seeka
  Get microbial sequence data easier and faster
  ☆28Updated 5 years ago
• iqbal-lab-org / varifier
  Variant call verification
  ☆16Updated 5 months ago
• schellt / backmap
  Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size
  ☆12Updated last month
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 6 months ago
• bacpop / mandrake
  Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding
  ☆38Updated 7 months ago
• imgag / plasmIDent
  ☆15Updated last year
• CFSAN-Biostatistics / shigatyper
  CFSAN Shigella Typing Pipeline
  ☆15Updated 2 years ago
• LaborBerlin / score-assemblies
  Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).
  ☆26Updated last year
• farhat-lab / fast-lineage-caller
  ☆14Updated 4 years ago