beardymcjohnface / KoverageLinks
Quickly get coverage statistics given reads and an assembly
☆16Updated last year
Alternatives and similar repositories for Koverage
Users that are interested in Koverage are comparing it to the libraries listed below
Sorting:
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 4 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Updated 2 years ago
- Colinear block visualisation tool☆31Updated 2 years ago
- Visualize microbial evolution at the SNP level!☆15Updated 5 months ago
- Simple-to-use interactive comparison of two bacterial genomes☆19Updated last month
- Fast viral consensus genome reconstruction☆25Updated 6 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 4 months ago
- metagenome population recombination rate estimation pipeline☆12Updated last month
- viralFlye pipeline☆18Updated last year
- software to identify primers that can distinguish genomes☆20Updated 3 weeks ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆21Updated last year
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Updated 3 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 9 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆12Updated last year
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 months ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated last week
- Rapid discovery of reciprocal best blast pairs.☆10Updated last year
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆39Updated last year
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20Updated last year
- Plasmid analysis using rearrangement distances☆49Updated 4 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 11 months ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- ☆14Updated 4 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Automated strain separation of low-complexity metagenomes☆52Updated 4 years ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year