beardymcjohnface / Koverage
Quickly get coverage statistics given reads and an assembly
☆13Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for Koverage
- Code to create a PRG from a Multiple Sequence Alignment file☆22Updated 7 months ago
- Plasmid analysis using rearrangement distances☆30Updated last week
- Strain-level haplotyping for metagenomes with short or long-reads.☆41Updated 4 months ago
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- Fast viral consensus genome reconstruction☆22Updated 4 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 5 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated this week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆40Updated 3 weeks ago
- Visualize microbial evolution at the SNP level!☆13Updated last week
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 4 months ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆24Updated 7 months ago
- Strain-level taxonomic classification of metagenomic data using pangenome graphs☆14Updated this week
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆22Updated 7 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆20Updated 8 months ago
- Bacterial taxonomy construction and evaluation in R☆13Updated 9 months ago
- tool to determine optimal refrerence genome given a set of fasta files☆14Updated last year
- Colinear block visualisation tool☆30Updated 10 months ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 weeks ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆19Updated 5 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆19Updated 4 months ago
- MAGScoT - a MAG scoring and refinement tool☆28Updated last month
- Intra-species bacterial contamination detection☆22Updated this week
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated 6 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆29Updated 3 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆21Updated last year
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆16Updated this week