bcgsc / chromeqcLinks
ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads
☆15Updated 6 years ago
Alternatives and similar repositories for chromeqc
Users that are interested in chromeqc are comparing it to the libraries listed below
Sorting:
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Fully automated generation of UCSC assembly hubs☆35Updated last year
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 3 months ago
- GATB Minia assembly pipeline☆31Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Updated last year
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Reference genome quality scores☆21Updated 4 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆34Updated 3 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆50Updated 4 years ago
- Hitting associations with k-mers☆44Updated 3 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 3 years ago
- Transfer coordinates across genomes☆23Updated 6 months ago