bcgsc / chromeqcLinks
ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads
☆15Updated 6 years ago
Alternatives and similar repositories for chromeqc
Users that are interested in chromeqc are comparing it to the libraries listed below
Sorting:
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Updated 6 years ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆35Updated 3 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- ☆26Updated 7 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆52Updated 7 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆26Updated 7 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 8 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- This repository is deprecated, please use the link to the right.☆23Updated 7 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 3 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Locus and lineage tests for bacterial GWAS☆28Updated 8 years ago
- GATB Minia assembly pipeline☆31Updated 3 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 7 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- The Zika bioinformatics pipeline☆36Updated 5 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- Using kallisto for metagenomic analysis☆49Updated 9 years ago
- Tool for visualising assemblies.☆17Updated 10 years ago