konstin / knn-for-homologyLinks
Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"
☆13Updated 2 years ago
Alternatives and similar repositories for knn-for-homology
Users that are interested in knn-for-homology are comparing it to the libraries listed below
Sorting:
- DeepECtransformer☆29Updated 2 years ago
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆27Updated 2 years ago
- ☆51Updated last year
- Fast protein domain structure embedding+search tool☆27Updated 3 months ago
- Protein Sequence Annotation with Language Models☆25Updated last week
- Finding patch of conserved amino acid sites in 3D structure☆13Updated 8 months ago
- Python framework for doing ancestral sequence reconstruction☆42Updated last year
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Updated 3 years ago
- Virus Protein Structural Analysis Toolkit☆14Updated last year
- Ancestral Sequence Reconstruction in Python☆14Updated 6 years ago
- A package for making tree-based visualizations for embedding vectors☆10Updated 2 years ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆20Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- GraphPart, a data partitioning method for ML on biological sequences☆33Updated 2 years ago
- ☆11Updated last year
- Graphical Representation of Ancestral Sequence Predictions☆12Updated 2 years ago
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆17Updated 2 years ago
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆40Updated last week
- Code for LazyAF pipeline☆21Updated last year
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Updated 11 months ago
- Long disorder consensus predictor☆17Updated 4 months ago
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Updated 4 years ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆58Updated 8 months ago
- ☆23Updated 2 years ago
- Phyla: Towards a Foundation Model for Phylogenetic Inference☆27Updated last month
- Protein Structure Archiver☆13Updated 4 months ago
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆33Updated 2 weeks ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆17Updated last year
- ☆19Updated last year
- a collection of colabs useful for molecular biology☆31Updated last year