alguoo314 / JASPERLinks
This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)
☆12Updated last year
Alternatives and similar repositories for JASPER
Users that are interested in JASPER are comparing it to the libraries listed below
Sorting:
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 9 months ago
- A reliable gap filling pipeline for draft genomes☆11Updated 6 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Updated 2 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Updated 9 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated last month
- Diploid genome assembly analysis tools☆14Updated last year
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 7 years ago
- ☆28Updated last year
- The MafFilter genome alignment processor☆19Updated 6 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 7 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Genome alignment and synteny plots☆33Updated 2 years ago
- ☆20Updated last year
- Consensus genome annotation using OMA☆27Updated 5 months ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Updated last year
- A comparative genome scaffolding tool☆16Updated 7 years ago
- Merging assemblies by using adjacency algebraic model and classification☆22Updated 2 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- FastK based version of Merqury☆28Updated 2 months ago