alguoo314 / JASPER
This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)
☆11Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for JASPER
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- ☆19Updated 11 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 3 months ago
- ☆19Updated 3 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 2 months ago
- A nextflow pipeline for polishing CLR assemblies☆16Updated last year
- Genome alignment and synteny plots☆27Updated last year
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆11Updated last year
- Genome assembly soft-masking using Red (REpeat Detector)☆12Updated 5 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆24Updated 8 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆25Updated 2 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated last year
- Scaffolding with assembly likelihood optimization☆20Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆17Updated 5 years ago
- a broadly applicable tool for automated gene identification and retrieval☆28Updated 4 months ago
- FastK based version of Merqury☆22Updated 3 weeks ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Generating UTRs from SHort Reads☆11Updated 4 years ago
- The MafFilter genome alignment processor☆17Updated 2 months ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆10Updated 5 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆12Updated 4 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Updated 8 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 3 weeks ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆10Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆23Updated 2 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago