alguoo314 / JASPER
This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)
☆12Updated 7 months ago
Alternatives and similar repositories for JASPER:
Users that are interested in JASPER are comparing it to the libraries listed below
- ☆19Updated last year
- ☆21Updated 5 months ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆15Updated 6 years ago
- A tool for recovering synteny blocks from multiple alignment☆29Updated 3 years ago
- ☆14Updated this week
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 5 months ago
- Genome alignment and synteny plots☆27Updated last year
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 4 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆26Updated 4 months ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 5 years ago
- A nextflow pipeline for polishing CLR assemblies☆16Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Quality control plotting for long reads☆10Updated 8 months ago
- Domain based annotation of transposable elements☆19Updated this week
- An R package to infer and analyze synteny networks from protein sequences☆25Updated last month
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 4 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 7 months ago
- Generating UTRs from SHort Reads☆11Updated 4 years ago
- Genome Assembly 102☆14Updated 2 weeks ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 2 years ago
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- ☆15Updated 3 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated last month
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last month