DReichLab / adnaLinks
Processing WGS aDNA data using the ReichLab protocol
☆13Updated 6 years ago
Alternatives and similar repositories for adna
Users that are interested in adna are comparing it to the libraries listed below
Sorting:
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Updated 2 weeks ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- Long read to reference genome mapping tool☆13Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- ☆16Updated 3 years ago
- ☆14Updated 2 years ago
- Pan gGnome Viewer☆10Updated 5 months ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago
- Detects human contamination in bam files☆16Updated 5 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- MEM mapper prototype☆13Updated 5 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- ☆11Updated 2 years ago
- ☆12Updated 3 months ago
- Naive PCA for genotype data☆10Updated 9 years ago
- Recommended Graphtyper pipelines☆15Updated 4 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 4 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Updated 10 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 6 years ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 3 years ago
- Long Approximate Matches-based Split Aligner☆13Updated 8 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated last month