Multiple Bacteria Genome Compressor (MBGC)
☆13Jun 1, 2026Updated last month
Alternatives and similar repositories for mbgc
Users that are interested in mbgc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Host depletion optimised for clinical metagenomic sequencing applications☆18May 18, 2026Updated last month
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- SOPanG, a simple tool for pattern matching over an elastic-degenerate string, a recently proposed simplified model for the pan-genome.☆10Apr 16, 2020Updated 6 years ago
- Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences☆64Aug 1, 2025Updated 11 months ago
- ☆10Feb 22, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- PgRC: Pseudogenome based Read Compressor☆14Nov 20, 2024Updated last year
- Library, simple CLI and GUI implementing "Reboot into" for UEFI managed systems. Library + CLI implemented in C. GUI implemented in C++/Q…☆13Feb 25, 2014Updated 12 years ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Dec 9, 2025Updated 6 months ago
- ☆11Mar 10, 2024Updated 2 years ago
- FQSqueezer - FASTQ compressor based on k-mer statistics☆18Feb 24, 2024Updated 2 years ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆22Jun 9, 2026Updated 3 weeks ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- FM-index representation of a de Bruijn graph☆26Aug 7, 2017Updated 8 years ago
- The modern argument parser for c++ tools☆11Jun 23, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Simple RAM benchmark for Linux.☆12Aug 4, 2021Updated 4 years ago
- Approximate nearest neighbour search for microbial genomes based on hash metric☆66Jun 10, 2026Updated 3 weeks ago
- vector illustrations of BWT based searching on small strings☆16Apr 29, 2019Updated 7 years ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21May 31, 2026Updated last month
- Identification of segmental duplications in the genome☆29Mar 1, 2022Updated 4 years ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 7 months ago
- Minimum plain text representation of kmer sets☆18Jan 30, 2025Updated last year
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Nov 24, 2024Updated last year
- Multiple sequence alignment browser☆11Dec 12, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A genomics-proteomics toolkit☆47Oct 18, 2023Updated 2 years ago
- Analysis of sequencing error profile for long read data.☆13Mar 30, 2023Updated 3 years ago
- Source code of the processing-in-memory simulator used in the GRIM-Filter paper published at BMC Genomics in 2018: "GRIM-Filter: Fast See…☆11Feb 5, 2018Updated 8 years ago
- A list of weak Bacterial assemblies in GenBank☆18Aug 3, 2017Updated 8 years ago
- Metagenomic binning using low-density hashing a support vector machine☆20Oct 2, 2020Updated 5 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆41Jun 15, 2026Updated 2 weeks ago
- Python3 module for running MUMmer and reading the output☆33Mar 24, 2025Updated last year
- ☆16Jun 18, 2020Updated 6 years ago
- A high efficiency binary format for sequencing data☆103Jun 26, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- command-line and python interface to the uniprot database☆10Jun 11, 2015Updated 11 years ago
- Algorithms that work on generic C arrays☆11Feb 13, 2017Updated 9 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Sep 18, 2025Updated 9 months ago
- OPAL: Open-community Profiling Assessment tooL☆30Apr 14, 2026Updated 2 months ago
- Credential Provider V2 for Win8 and Win10 with RDP only option☆27Jan 10, 2019Updated 7 years ago
- Bit-packed and well-typed biological sequences☆46May 17, 2026Updated last month
- Deep DNA Storage: Scalable and Robust DNA-based Storage via Coding Theory and Deep Learning☆23May 13, 2025Updated last year