A simulator for horizontal gene transfer (HGT) in microbial communities
☆10Oct 5, 2020Updated 5 years ago
Alternatives and similar repositories for HgtSIM
Users that are interested in HgtSIM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A novel bioinformatics pipeline for recent horizontal gene transfer detecting.☆12Nov 13, 2018Updated 7 years ago
- Searching for Horizontal Gene Transfer☆10Feb 22, 2020Updated 6 years ago
- Horizontal gene transfer (HGT) identification pipeline☆71May 17, 2023Updated 2 years ago
- Prediction of horizontal gene transfer (HGT) using graph convolutional network☆12Apr 25, 2022Updated 4 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 2…☆10Jan 12, 2019Updated 7 years ago
- Set of tools for viral metagenomics.☆14Jan 21, 2026Updated 3 months ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 2 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆26Dec 26, 2022Updated 3 years ago
- Helper scripts for making phylogenies☆15Jun 7, 2024Updated last year
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- A Swiss-Army-Knife for Bioinformaticians☆15Mar 20, 2026Updated last month
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- 📈Annotate a ggplot with a description of a linear model☆22Feb 9, 2019Updated 7 years ago
- Python package for common tasks in bioinformatic.☆12Sep 24, 2025Updated 7 months ago
- Integrative virome pipeline☆13Nov 4, 2024Updated last year
- dada2 formatted nifH database☆13May 17, 2024Updated last year
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 5 years ago
- Python interface for running COMETS simulations and analyzing the results☆16Feb 24, 2026Updated 2 months ago
- CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.☆13Oct 18, 2021Updated 4 years ago
- Workflow for detecting genome-wide horizontal gene transfers☆10May 29, 2018Updated 7 years ago
- This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.☆15Mar 16, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code and data associated with Duffy, James, and Longworth Applied and Environmental Microbiology paper describing the ecology, virulence,…☆11May 8, 2018Updated 7 years ago
- PgRC: Pseudogenome based Read Compressor☆14Nov 20, 2024Updated last year
- Parallel k-mer indexing for biological sequences☆12Dec 14, 2018Updated 7 years ago
- R package for computing alpha and beta contributional diversity metrics☆11May 5, 2023Updated 2 years ago
- ☆17Dec 5, 2017Updated 8 years ago
- genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorph…☆16Mar 3, 2022Updated 4 years ago
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago
- GenGIS (pronounced 'Genghis' like Genghis Khan) is a bioinformatics application that allows users to combine digital map data with inform…☆29Nov 9, 2017Updated 8 years ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Computes graph connectivity for large graphs☆11Jan 30, 2017Updated 9 years ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆19Apr 8, 2022Updated 4 years ago
- agent based modelling☆35Aug 28, 2024Updated last year
- Assemble the Genome in a Bottle sequencing data☆10Aug 4, 2017Updated 8 years ago
- Scaffolding with Ultralong Reads☆15Nov 11, 2020Updated 5 years ago
- Get microbial sequence data easier and faster☆28Nov 7, 2019Updated 6 years ago
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆18Oct 31, 2017Updated 8 years ago