CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification of environmental marker genes from sequencing-based community profiling studies.
☆12Mar 20, 2022Updated 4 years ago
Alternatives and similar repositories for CREST
Users that are interested in CREST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bitpacked sequence trait and implementation☆19Jul 7, 2026Updated last week
- Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn☆12Sep 10, 2021Updated 4 years ago
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.☆12Jun 23, 2025Updated last year
- Mapping-Assisted Targeted-Assembly for Metagenomics☆27Mar 28, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆18Nov 24, 2025Updated 7 months ago
- ☆17Jun 5, 2026Updated last month
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆13Jul 19, 2023Updated 3 years ago
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- A multi-algorithmic framework for phylogenetic inference☆14Jul 11, 2026Updated last week
- I've always wondered why there are so few games in R.☆13Nov 21, 2022Updated 3 years ago
- Utilities for community ecology analysis☆21Oct 2, 2020Updated 5 years ago
- A database for signatures of public genomic sources☆18Updated this week
- ☆23Apr 3, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆14Dec 12, 2017Updated 8 years ago
- PgRC: Pseudogenome based Read Compressor☆14Nov 20, 2024Updated last year
- Bacterial Operon Finder for Functional Organization☆15Nov 14, 2023Updated 2 years ago
- PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees☆14Apr 15, 2024Updated 2 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 4 years ago
- The Dagstuhl Format for Assembly☆13Oct 16, 2017Updated 8 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Mar 3, 2023Updated 3 years ago
- PaperBLAST: find papers about a protein or its homologs☆53Updated this week
- ✅ PeopleBudget is an open-source tool for hosting participatory budgets elections at the local level.☆10Oct 4, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Index kmtricks bf matrices☆49Jul 6, 2026Updated 2 weeks ago
- The carbfix.dat thermodynamic database for PHREEQC☆19Jul 24, 2025Updated 11 months ago
- QGIS svg icons - Animal silhouettes☆14Nov 17, 2018Updated 7 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jun 24, 2026Updated 3 weeks ago
- ☆63Dec 30, 2020Updated 5 years ago
- Tools for biogas research in R: process biogas data and predict biogas production☆15Mar 17, 2026Updated 4 months ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24May 30, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆33Jul 16, 2023Updated 3 years ago
- k-mer Counter based on Multiple Burst Trees (multi-threaded)☆13Aug 31, 2016Updated 9 years ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆13Oct 11, 2022Updated 3 years ago
- The shiny app that accompanies the ngsReports R package☆14Jun 10, 2021Updated 5 years ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- A synthesis of bacterial and archaeal phenotypic trait data☆36Nov 9, 2023Updated 2 years ago