CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification of environmental marker genes from sequencing-based community profiling studies.
☆12Mar 20, 2022Updated 4 years ago
Alternatives and similar repositories for CREST
Users that are interested in CREST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn☆12Sep 10, 2021Updated 4 years ago
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.☆12Jun 23, 2025Updated 9 months ago
- Mapping-Assisted Targeted-Assembly for Metagenomics☆27Mar 28, 2025Updated last year
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆12Jul 19, 2023Updated 2 years ago
- ☆17May 13, 2025Updated 10 months ago
- Bitpacked sequence trait and implementation☆16Feb 27, 2026Updated last month
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year
- A multi-algorithmic framework for phylogenetic inference☆14Nov 28, 2025Updated 4 months ago
- Utilities for community ecology analysis☆20Oct 2, 2020Updated 5 years ago
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 3 months ago
- ☆22Apr 3, 2023Updated 3 years ago
- ☆14Dec 12, 2017Updated 8 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- I've always wondered why there are so few games in R.☆13Nov 21, 2022Updated 3 years ago
- Bacterial Operon Finder for Functional Organization☆15Nov 14, 2023Updated 2 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 3 years ago
- The Dagstuhl Format for Assembly☆13Oct 16, 2017Updated 8 years ago
- PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees☆14Apr 15, 2024Updated last year
- PaperBLAST: find papers about a protein or its homologs☆52Mar 24, 2026Updated 2 weeks ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆20Mar 3, 2023Updated 3 years ago
- QGIS svg icons - Animal silhouettes☆12Nov 17, 2018Updated 7 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆56Dec 30, 2020Updated 5 years ago
- ✅ PeopleBudget is an open-source tool for hosting participatory budgets elections at the local level.☆10Oct 4, 2022Updated 3 years ago
- Index kmtricks bf matrices☆48Mar 30, 2026Updated last week
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- PgRC: Pseudogenome based Read Compressor☆14Nov 20, 2024Updated last year
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24May 30, 2024Updated last year
- k-mer Counter based on Multiple Burst Trees (multi-threaded)☆13Aug 31, 2016Updated 9 years ago
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆11Oct 11, 2022Updated 3 years ago
- The shiny app that accompanies the ngsReports R package☆13Jun 10, 2021Updated 4 years ago
- ☆33Jul 16, 2023Updated 2 years ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- ASMNGS20 - 2020 Conference Details☆15Jun 10, 2022Updated 3 years ago
- A synthesis of bacterial and archaeal phenotypic trait data☆35Nov 9, 2023Updated 2 years ago
- The carbfix.dat thermodynamic database for PHREEQC☆19Jul 24, 2025Updated 8 months ago