EnDED is a program that aims to detect environmentally-driven ("indirect") edges in an association network.
☆10Dec 1, 2023Updated 2 years ago
Alternatives and similar repositories for EnDED
Users that are interested in EnDED are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- annotating microbial co-occurrence networks☆12Oct 7, 2025Updated 10 months ago
- ☆11Aug 26, 2022Updated 4 years ago
- Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.☆18Feb 2, 2026Updated 6 months ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 3 years ago
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- SMETANA: a tool to analyse interactions in microbial communities☆74May 6, 2025Updated last year
- Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling☆19May 26, 2026Updated 3 months ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆19Mar 17, 2021Updated 5 years ago
- ☆21Apr 1, 2025Updated last year
- Distance denoise by Entropy☆16Oct 17, 2025Updated 10 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆48Nov 9, 2022Updated 3 years ago
- The sars R package☆10Jan 6, 2026Updated 7 months ago
- ☆19Jan 16, 2024Updated 2 years ago
- ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test☆15Mar 7, 2019Updated 7 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Code to generate re-assemblies of the Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)☆23Apr 14, 2019Updated 7 years ago
- Tools and utilities for making use of mastiff☆12Mar 10, 2023Updated 3 years ago
- A python library for metabolic networks sampling and analysis☆70May 22, 2026Updated 3 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆83Mar 2, 2023Updated 3 years ago
- ☆24Oct 19, 2023Updated 2 years ago
- Mobile app part of the project to warn farmers about lightning strikes☆12May 4, 2026Updated 3 months ago
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆93Oct 9, 2025Updated 10 months ago
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆89Jul 13, 2026Updated last month
- Parse test results from JUnit, TestNG, xUnit and many more☆13Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆19Feb 5, 2022Updated 4 years ago
- Data portal client and server for NMDC.☆12Updated this week
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated 2 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated 2 years ago
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆69May 9, 2026Updated 3 months ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆13Oct 11, 2022Updated 3 years ago
- Materials and presentation for the 2022 ISB Microbiome course.☆27Jun 13, 2024Updated 2 years ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆37Updated this week
- ☆47Jun 27, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆37Jul 15, 2026Updated last month
- BiG-MEx implementation as Docker images and R packages☆13Feb 9, 2022Updated 4 years ago
- ☆12Dec 28, 2021Updated 4 years ago
- ☆12Aug 6, 2026Updated 3 weeks ago
- FLYCOP (FLexible sYnthetic Consortium OPtimization)☆12Sep 24, 2018Updated 7 years ago
- Strain Resolution ON Graphs☆51Jul 18, 2023Updated 3 years ago
- Automated processing of Sanger sequencing data, taxonomic profiling, and generation of microbial strain libraries☆19Jan 4, 2026Updated 7 months ago