shotgun pipeline
☆12Apr 3, 2019Updated 6 years ago
Alternatives and similar repositories for oecophylla
Users that are interested in oecophylla are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- exploratory and interactive microbiome analyses based on heatmaps☆27Jan 27, 2025Updated last year
- Command line client and Python libraries for CosmosID API☆12Oct 28, 2025Updated 4 months ago
- A set of programs for the taxonomic analysis of genetic sequences☆15Jun 12, 2023Updated 2 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Feb 10, 2026Updated last month
- Model-based Integration of Metabolite Observations and Species Abundances☆24Feb 21, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆17Feb 17, 2026Updated last month
- ☆24Dec 5, 2018Updated 7 years ago
- Helper scripts for making phylogenies☆15Jun 7, 2024Updated last year
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Feb 6, 2023Updated 3 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 4 years ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Dec 12, 2024Updated last year
- Automatically calculate phylogenetic trees from bacterial core genes☆20May 13, 2025Updated 10 months ago
- A very simple BLAST filtering pipeline☆19Mar 28, 2014Updated 11 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- a novel encoding method for viral identification in metagenomics☆15Sep 20, 2023Updated 2 years ago
- ☆16Jun 21, 2018Updated 7 years ago
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆132Oct 6, 2023Updated 2 years ago
- GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF☆19Oct 30, 2020Updated 5 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Oct 3, 2023Updated 2 years ago
- MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-thro…☆26Nov 14, 2022Updated 3 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆19Aug 4, 2020Updated 5 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆25Jan 15, 2026Updated 2 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆28Jun 1, 2017Updated 8 years ago
- An interactive radial tree for functional hierarchies and omics data visualization☆26Mar 15, 2026Updated last week
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆49Apr 14, 2020Updated 5 years ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆19Jul 24, 2023Updated 2 years ago
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆21Nov 14, 2025Updated 4 months ago
- Confirming specific taxonomic groups within your samples.☆19Dec 21, 2020Updated 5 years ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆58Feb 7, 2026Updated last month
- A visualization tool for Systems-Level Interactive Data Exploration☆12Jan 12, 2022Updated 4 years ago
- Vanilla Components - Ergonomic and Widely Reusable☆23Sep 3, 2016Updated 9 years ago
- Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm☆18May 23, 2014Updated 11 years ago
- Scripts for analyzing Illumina-generated environmental DNA sequence data.☆20Feb 22, 2018Updated 8 years ago
- A comprehensive pipeline for short read metagenomic data☆25Aug 25, 2020Updated 5 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago