biocore / oecophylla
shotgun pipeline
☆12Updated 6 years ago
Alternatives and similar repositories for oecophylla:
Users that are interested in oecophylla are comparing it to the libraries listed below
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated this week
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated 10 months ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Python package for common tasks in bioinformatic.☆13Updated last year
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆12Updated last year
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 2 months ago
- MAG Circularization Method☆33Updated 2 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 11 months ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 7 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 3 months ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- A method of assessing sequence complexity based on kmer frequencies☆31Updated 7 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 3 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome☆21Updated 5 months ago
- Automatic eukaryotic taxonomic classification☆28Updated last month
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 7 months ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 6 months ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- StrainEst - abundance estimation of strains☆21Updated 5 years ago
- ☆43Updated last year