metagentools / GraphBin2
β―οΈπ§¬ Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
β33Updated 5 months ago
Alternatives and similar repositories for GraphBin2:
Users that are interested in GraphBin2 are comparing it to the libraries listed below
- Reference-free Binning of Metagenomics Long Reads using Coverage and Compositionβ20Updated 5 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigsβ27Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and metβ¦β43Updated last week
- Strain Resolution ON Graphsβ47Updated last year
- π¦π§¬ Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphsβ62Updated 5 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.β50Updated 7 months ago
- strain-level analysis toolsβ34Updated 4 months ago
- Identify phage regions in bacterial genomes for masking purposesβ30Updated 5 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictorsβ22Updated 10 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.β24Updated last week
- A python library for predicting phage lifestyle based on genome sequenceβ35Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016β¦β31Updated 2 years ago
- Fast and space-efficient taxonomic classification of long readsβ43Updated this week
- Rapid discovery of novel prophages using biological feature engineering and machine learningβ37Updated 2 months ago
- IslandPath standalone softwareβ31Updated last year
- Automated strain separation of low-complexity metagenomesβ51Updated 3 years ago
- aweMAGs: a fully automated workflow for eukariotic MAGsβ11Updated last year
- Recombination-free treesβ57Updated last year
- Plasmid analysis using rearrangement distancesβ31Updated 3 months ago
- A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/plβ¦β26Updated 8 months ago
- Microbial agile accurate SNP Typerβ29Updated last year
- viralFlye pipelineβ18Updated 6 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genesβ34Updated last week
- Predict prokaryotic host for phage metagenomic sequencesβ52Updated 5 months ago
- Small utility script to submit genomes to PHASTER for phage detectionβ23Updated 3 years ago
- Unified Human Gut Virome Catalogβ27Updated 7 months ago
- MAGScoT - a MAG scoring and refinement toolβ31Updated 4 months ago
- β31Updated last year
- Bacterial GWAS analysisβ36Updated this week
- Assessing and Improving the quality of metagenomic assembliesβ28Updated 3 years ago