metagentools / GraphBin2Links
β―οΈπ§¬ Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
β36Updated 3 months ago
Alternatives and similar repositories for GraphBin2
Users that are interested in GraphBin2 are comparing it to the libraries listed below
Sorting:
- π¦π§¬ Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphsβ63Updated 9 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.β31Updated this week
- Strain-level haplotyping for metagenomes with short or long-reads.β51Updated 2 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.β45Updated last month
- Comparison pipeline for Prokaryote Protein Coding Gene Predictorsβ23Updated this week
- β32Updated 4 months ago
- β54Updated last year
- Automated strain separation of low-complexity metagenomesβ51Updated 3 years ago
- Phylogenetic compression of extremely large genome collections [661k βππ²ππΆπ | BIGSIdata βπ°π΄ππΆπ | AllTheBact'23 βπ³π±ππΆπ]β36Updated 2 months ago
- Strain Resolution ON Graphsβ48Updated last year
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codesβ36Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016β¦β31Updated 2 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.β25Updated 2 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learningβ37Updated 6 months ago
- Unified Human Gut Virome Catalogβ32Updated 11 months ago
- A python library for predicting phage lifestyle based on genome sequenceβ38Updated last year
- Downstream processing of VAMB binning for Viral Elucidationβ50Updated 11 months ago
- Bifrost graph gene caller.β95Updated 9 months ago
- β35Updated last year
- Discover and annotate the viromeβ43Updated 2 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigsβ28Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPsβ28Updated 8 months ago
- Recombination-free treesβ58Updated 3 months ago
- GTDB taxonomy taxdump files with trackable TaxIdsβ54Updated last month
- KEGG Module Evaluation Toolβ30Updated last year
- Assessing and Improving the quality of metagenomic assembliesβ29Updated 3 years ago
- IslandPath standalone softwareβ32Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genesβ36Updated 2 months ago
- Classify metagenomic contigs as eukaryotic or prokaryoticβ37Updated 2 years ago
- strain-level analysis toolsβ38Updated 8 months ago