ngs-docs / 2018-cicese-metatranscriptomicsLinks
repo for cicese metatranscriptomics workshop, nov 2018
☆14Updated 5 years ago
Alternatives and similar repositories for 2018-cicese-metatranscriptomics
Users that are interested in 2018-cicese-metatranscriptomics are comparing it to the libraries listed below
Sorting:
- ☆32Updated last year
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- Qiime2 snakemake pipeline☆20Updated 2 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 11 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆55Updated 7 months ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- Metagenomics Workshop☆28Updated 9 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆39Updated 4 months ago
- Analysing Metagenomic Species (MGS)☆42Updated 5 years ago
- Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis☆15Updated 9 months ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 6 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20Updated 8 years ago
- workflows for offline analysis of 16S rRNA Nanopore data☆16Updated 2 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆34Updated 5 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- ☆22Updated 2 months ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆57Updated 3 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 3 years ago
- ☆41Updated 4 years ago
- ☆21Updated 5 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆47Updated 5 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated last year
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- ☆32Updated 2 years ago