SamStudio8 / gretelLinks
An algorithm for recovering haplotypes from metagenomes
☆31Updated 3 years ago
Alternatives and similar repositories for gretel
Users that are interested in gretel are comparing it to the libraries listed below
Sorting:
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last week
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- Find Unique genomic Regions☆30Updated 2 months ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆45Updated 2 years ago
- viralFlye pipeline☆18Updated 10 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated last month
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆35Updated last year
- Convert genbank files to a swath of other formats☆18Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated 2 months ago
- Output FASTQ summary statistics in JSON format☆30Updated 2 years ago
- Genome size estimation from long read overlaps☆57Updated 2 months ago
- ☆45Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- strain-level analysis tools☆38Updated 8 months ago
- Colinear block visualisation tool☆31Updated last year
- Fast viral consensus genome reconstruction☆23Updated 3 weeks ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- ☆42Updated 3 months ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆23Updated 4 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated this week
- Full-length de novo viral haplotype reconstruction from noisy long reads☆20Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- frame-shift correction for long-read (meta)genomics☆33Updated last year
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆36Updated 2 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Recombination-free trees☆58Updated 3 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago