RVanDamme / MUFFIN
hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis
☆68Updated last month
Alternatives and similar repositories for MUFFIN:
Users that are interested in MUFFIN are comparing it to the libraries listed below
- Toolbox for comparative genomics of MAGs☆82Updated 2 years ago
- ☆131Updated 9 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆192Updated 2 months ago
- The NFDI4Microbiota Knowledge Base☆28Updated last week
- Hands-on workflow for learning metagenomics including DNA mapping, binning, QC and annotation. Answers and example code available in the…☆12Updated 3 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 9 months ago
- ☆14Updated 2 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated 7 months ago
- Binning Virus Genomes from Metagenomes☆62Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆59Updated last month
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆47Updated last year
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆41Updated 4 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 11 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆58Updated last month
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆32Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆55Updated 3 weeks ago
- IS mapping software☆53Updated 3 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆62Updated 6 months ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆55Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 5 months ago
- Supporting code for uncultivated gut virus manuscript☆69Updated last year
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆75Updated 6 months ago
- Horizontal gene transfer (HGT) identification pipeline☆57Updated last year
- Tool to estimate genome quality of microbial eukaryotes☆37Updated 2 months ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆66Updated 7 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆116Updated last year
- ☆50Updated last year
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- ☆50Updated 11 months ago