RVanDamme / MUFFINLinks
hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis
☆69Updated 7 months ago
Alternatives and similar repositories for MUFFIN
Users that are interested in MUFFIN are comparing it to the libraries listed below
Sorting:
- Toolbox for comparative genomics of MAGs☆85Updated last week
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆87Updated last year
- Hands-on workflow for learning metagenomics including DNA mapping, binning, QC and annotation. Answers and example code available in the…☆13Updated 3 years ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆26Updated 5 months ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- ☆61Updated last year
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- ARG normalization by mapping to the ARO ontology.☆58Updated last month
- ☆146Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 7 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆60Updated 5 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated this week
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated last month
- ☆24Updated 6 years ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆96Updated 2 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆74Updated last year
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆48Updated 2 years ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆85Updated 4 months ago
- Horizontal gene transfer (HGT) identification pipeline☆62Updated 2 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆51Updated 2 months ago
- ☆20Updated last year
- ☆53Updated 2 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆98Updated 2 months ago
- ☆40Updated 4 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago