RVanDamme / MUFFINView external linksLinks
hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis
☆70Feb 9, 2025Updated last year
Alternatives and similar repositories for MUFFIN
Users that are interested in MUFFIN are comparing it to the libraries listed below
Sorting:
- ☆16May 19, 2022Updated 3 years ago
- The NFDI4Microbiota Knowledge Base, for visualizing dev branch: https://kb-dev.nfdi4microbiota.de☆26Updated this week
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆218Jan 27, 2025Updated last year
- Luslab nextflow modules☆14Apr 30, 2021Updated 4 years ago
- Toolbox for comparative genomics of MAGs☆89Nov 5, 2025Updated 3 months ago
- This repository is about an application to make a world cloud from any kind of document.☆18Sep 6, 2023Updated 2 years ago
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆224Jan 20, 2026Updated 3 weeks ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆146Dec 17, 2025Updated last month
- Long-read metagenomic analysis☆110Oct 10, 2023Updated 2 years ago
- ☆26Jun 20, 2023Updated 2 years ago
- ATLAS - Three commands to start analyzing your metagenome data☆402Nov 28, 2025Updated 2 months ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated last year
- High-quality Nanopore-only genome polisher☆69Aug 16, 2024Updated last year
- Rapid determination of appropriate reference genomes.☆99Jan 22, 2025Updated last year
- This repository is about an application to make a world cloud from any kind of document/s.☆25Sep 6, 2023Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- A complete pipeline for metagenomic analysis☆440Jan 21, 2026Updated 3 weeks ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Jun 26, 2018Updated 7 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆104Jan 27, 2026Updated 2 weeks ago
- Assemble bacterial isolate genomes from Nanopore reads☆127Jan 22, 2025Updated last year
- WtP: Phage identification via nextflow and docker or singularity☆103Feb 2, 2026Updated last week
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆87Dec 27, 2024Updated last year
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆34Sep 20, 2022Updated 3 years ago
- Strain resolver for metagenomics☆80Aug 2, 2024Updated last year
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆574Updated this week
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆67Mar 12, 2025Updated 11 months ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Aug 4, 2024Updated last year
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- A set of programs for the taxonomic analysis of genetic sequences☆14Jun 12, 2023Updated 2 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 2 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆319Feb 3, 2026Updated last week
- Read alignment statistics for metagenomics☆387Jan 16, 2026Updated 3 weeks ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆73Sep 1, 2022Updated 3 years ago
- Metagenomic Binning Algorithm☆51Jan 16, 2026Updated 3 weeks ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆235Oct 12, 2025Updated 4 months ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆17Dec 5, 2025Updated 2 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆24Oct 15, 2025Updated 3 months ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆79Nov 23, 2023Updated 2 years ago