tetramerFreqs / BinningLinks
Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmons, B.C. Thomas, A.P. Yelton, and J.F. Banfield (2009). Community-wide analysis of microbial genome sequence signatures. Genome Biology, 10: R85
☆17Updated 3 years ago
Alternatives and similar repositories for Binning
Users that are interested in Binning are comparing it to the libraries listed below
Sorting:
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- Tools for extracting individual genomes from metagenomes☆16Updated last year
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆12Updated 7 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- De novo Extraction of Strains from MetAgeNomes☆70Updated 5 years ago
- Estimate metagenomic coverage and sequence diversity☆54Updated last year
- GraftM - Rapid community profiles from metagenomes☆45Updated last year
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- A simple script to display stuff on a world map with R and ggplot☆17Updated 2 years ago
- Metagenomic binning suite☆29Updated 2 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆37Updated 2 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆68Updated 3 weeks ago
- ☆37Updated 3 years ago
- Whole genome core alignments from multiple draft genomes☆13Updated 9 years ago
- Microbial Populations as Clusters Of Gene Transfer☆43Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆59Updated 7 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 4 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- workflows for offline analysis of 16S rRNA Nanopore data☆15Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago