fungs / taxator-tkLinks
A set of programs for the taxonomic analysis of genetic sequences
☆13Updated 2 years ago
Alternatives and similar repositories for taxator-tk
Users that are interested in taxator-tk are comparing it to the libraries listed below
Sorting:
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆24Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- Resolving Species Level Classification Using Emu☆13Updated last year
- Phasing for metagenomics using PacBio long reads☆17Updated 4 years ago
- strain-level analysis tools☆38Updated 8 months ago
- Assign taxonomic ranks based on evolutionary divergence.☆23Updated 3 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- MAG Circularization Method☆33Updated 3 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 3 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆38Updated last month
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 3 months ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated 3 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated this week
- frame-shift correction for long-read (meta)genomics☆34Updated last year
- Intra-species bacterial contamination detection☆25Updated 5 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 5 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Microbial agile accurate SNP Typer☆30Updated last year
- reference-based long read assemblies of bacterial genomes☆50Updated 3 years ago
- Strain Resolution ON Graphs☆48Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 9 months ago
- ☆31Updated last year
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆24Updated last month
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 4 months ago