CLI tool to annotate genes with KOfam
☆108Jun 6, 2023Updated 3 years ago
Alternatives and similar repositories for kofam_scan
Users that are interested in kofam_scan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆233Mar 24, 2026Updated 6 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆83Mar 2, 2023Updated 3 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆342Updated this week
- Toolbox for comparative genomics of MAGs☆93Jul 30, 2026Updated 2 months ago
- Bioinformatics program inStrain☆192Oct 9, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Read alignment statistics for metagenomics☆408Updated this week
- Microbial RNA annotation☆316Apr 12, 2026Updated 6 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆623Updated this week
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆170Apr 23, 2025Updated last year
- Binning Virus Genomes from Metagenomes☆76Jul 13, 2022Updated 4 years ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆212Sep 22, 2026Updated 3 weeks ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- DAS Tool☆177Oct 9, 2026Updated last week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆188Mar 17, 2026Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆208Jun 10, 2026Updated 4 months ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆18Dec 29, 2022Updated 3 years ago
- A user-friendly workflow for phylogenomics☆234Sep 28, 2026Updated 2 weeks ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆275May 13, 2026Updated 5 months ago
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆299Nov 28, 2024Updated last year
- SemiBin: metagenomics binning with self-supervised deep learning☆175Updated this week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆410Mar 2, 2026Updated 7 months ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆155Sep 29, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆27Jun 20, 2023Updated 3 years ago
- ☆52Jun 11, 2025Updated last year
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆23Aug 17, 2026Updated 2 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated 2 years ago
- KEGG Module Evaluation Tool☆33Mar 5, 2026Updated 7 months ago
- Rapid comparison and dereplication of genomes☆359Oct 9, 2026Updated last week
- Automatic eukaryotic taxonomic classification☆33May 9, 2025Updated last year
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆109Dec 11, 2023Updated 2 years ago
- geNomad: Identification of mobile genetic elements☆337Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆64Feb 27, 2024Updated 2 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆280Mar 20, 2025Updated last year
- Rapid determination of appropriate reference genomes.☆103Jan 22, 2025Updated last year
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆479Oct 9, 2026Updated last week
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated 7 months ago
- antiSMASH☆268Oct 9, 2026Updated last week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆236Updated this week