CLI tool to annotate genes with KOfam
☆92Jun 6, 2023Updated 2 years ago
Alternatives and similar repositories for kofam_scan
Users that are interested in kofam_scan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆82Mar 2, 2023Updated 3 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆220Jan 27, 2025Updated last year
- Toolbox for comparative genomics of MAGs☆88Updated this week
- Bioinformatics program inStrain☆182Mar 12, 2026Updated 2 weeks ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆325Mar 18, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Bacterial ribosomal RNA predictor☆287Jan 10, 2026Updated 2 months ago
- Read alignment statistics for metagenomics☆395Mar 16, 2026Updated 2 weeks ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆587Feb 21, 2026Updated last month
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆34Jan 19, 2026Updated 2 months ago
- Binning Virus Genomes from Metagenomes☆72Jul 13, 2022Updated 3 years ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆161Apr 23, 2025Updated 11 months ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆203Aug 25, 2025Updated 7 months ago
- DAS Tool☆169May 2, 2024Updated last year
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆257Jul 27, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆144Dec 17, 2025Updated 3 months ago
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆179Mar 17, 2026Updated last week
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆193Mar 6, 2026Updated 3 weeks ago
- ☆25Jun 20, 2023Updated 2 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆283Nov 28, 2024Updated last year
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆17Dec 29, 2022Updated 3 years ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆404Mar 2, 2026Updated 3 weeks ago
- SemiBin: metagenomics binning with self-supervised deep learning☆156Feb 19, 2026Updated last month
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated last year
- geNomad: Identification of mobile genetic elements☆297Mar 18, 2026Updated last week
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Automatic eukaryotic taxonomic classification☆29May 9, 2025Updated 10 months ago
- A user-friendly workflow for phylogenomics☆225Feb 5, 2026Updated last month
- KEGG Module Evaluation Tool☆33Mar 5, 2026Updated 3 weeks ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated 3 weeks ago
- ☆51Updated this week
- Rapid comparison and dereplication of genomes☆330Nov 10, 2025Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Assessing the quality of metagenome-derived genome bins using machine learning☆252Mar 20, 2025Updated last year
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆108Dec 11, 2023Updated 2 years ago
- ☆63Feb 27, 2024Updated 2 years ago
- Fast genome-wide functional annotation through orthology assignment☆710Updated this week
- gutSMASH☆58Oct 3, 2025Updated 5 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆467Jul 28, 2023Updated 2 years ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆17Jan 13, 2026Updated 2 months ago