CLI tool to annotate genes with KOfam
☆99Jun 6, 2023Updated 3 years ago
Alternatives and similar repositories for kofam_scan
Users that are interested in kofam_scan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆83Mar 2, 2023Updated 3 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆228Mar 24, 2026Updated 2 months ago
- Toolbox for comparative genomics of MAGs☆91Apr 28, 2026Updated last month
- Bioinformatics program inStrain☆188Mar 12, 2026Updated 3 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆334Jun 3, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Microbial RNA annotation☆298Apr 12, 2026Updated 2 months ago
- Read alignment statistics for metagenomics☆399Jun 11, 2026Updated last week
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆607May 20, 2026Updated 3 weeks ago
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆38Apr 7, 2026Updated 2 months ago
- Binning Virus Genomes from Metagenomes☆75Jul 13, 2022Updated 3 years ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆207Aug 25, 2025Updated 9 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆166Apr 23, 2025Updated last year
- DAS Tool☆174May 2, 2024Updated 2 years ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆266May 13, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆150Dec 17, 2025Updated 6 months ago
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 3 months ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆199Jun 10, 2026Updated last week
- ☆27Jun 20, 2023Updated 2 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆293Nov 28, 2024Updated last year
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆17Dec 29, 2022Updated 3 years ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆410Mar 2, 2026Updated 3 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Jul 8, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- SemiBin: metagenomics binning with self-supervised deep learning☆164Jun 7, 2026Updated last week
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- geNomad: Identification of mobile genetic elements☆316Mar 29, 2026Updated 2 months ago
- Automatic eukaryotic taxonomic classification☆33May 9, 2025Updated last year
- A user-friendly workflow for phylogenomics☆230May 12, 2026Updated last month
- KEGG Module Evaluation Tool☆33Mar 5, 2026Updated 3 months ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated 3 months ago
- ☆55Mar 29, 2026Updated 2 months ago
- Rapid comparison and dereplication of genomes☆346Nov 10, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Assessing the quality of metagenome-derived genome bins using machine learning☆267Mar 20, 2025Updated last year
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆109Dec 11, 2023Updated 2 years ago
- ☆64Feb 27, 2024Updated 2 years ago
- Fast genome-wide functional annotation through orthology assignment☆745May 22, 2026Updated 3 weeks ago
- gutSMASH☆60Oct 3, 2025Updated 8 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆472Jul 28, 2023Updated 2 years ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆18Jan 13, 2026Updated 5 months ago