snakemake-workflows / snakemake-workflow-templateLinks
A template for standard compliant snakemake-workflows
☆117Updated last month
Alternatives and similar repositories for snakemake-workflow-template
Users that are interested in snakemake-workflow-template are comparing it to the libraries listed below
Sorting:
- Cookiecutter for snakemake slurm profile☆134Updated last year
- A short tutorial on getting started with Snakemake for workflow management☆57Updated 6 years ago
- A simple Snakemake profile for Slurm without --cluster-config☆165Updated last year
- NBIS/Elixir course: Tools for Reproducible Research☆65Updated last month
- Demonstrating best practices for bioinformatics command line tools☆116Updated 5 years ago
- Config files used to define parameters specific to compute environments at different Institutions☆104Updated this week
- This is the development home of the Snakemake wrapper repository, see☆237Updated this week
- machine-readable file format for genomic library sequence and structure☆125Updated 3 months ago
- Monitor computational workflows in real time☆73Updated last year
- Module for embedding igv.js in an IPython notebook☆80Updated 10 months ago
- The uncompromising Snakemake code formatter☆181Updated last month
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆107Updated 6 months ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆91Updated 4 months ago
- A Github action for running a Snakemake workflow☆62Updated this week
- Turn an existing conda environment into a Singularity container☆82Updated 2 years ago
- Snakemake profile for running jobs on an LSF cluster☆38Updated last year
- Simple test framework for Nextflow pipelines☆173Updated last month
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆122Updated 2 months ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆109Updated 3 months ago
- Reference genome resource manager☆74Updated 2 years ago
- Demultiplexing pipeline for sequencing data☆51Updated 2 weeks ago
- A proof of concept of RNAseq pipeline☆81Updated last month
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆85Updated this week
- A C++ drop-in replacement of FastQC to assess the quality of sequence read data☆122Updated 3 months ago
- Testing building mulled containers for multi-requirement tools.☆80Updated 2 weeks ago
- R tools for Agilent electrophoresis data☆46Updated 2 years ago
- Example Nextflow pipelines and programming techniques☆106Updated 2 months ago
- Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…☆167Updated 2 weeks ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Data Science Operations (dso) command line tool☆44Updated 3 months ago