snakemake-workflows / snakemake-workflow-templateLinks
A template for standard compliant snakemake-workflows
☆111Updated 3 weeks ago
Alternatives and similar repositories for snakemake-workflow-template
Users that are interested in snakemake-workflow-template are comparing it to the libraries listed below
Sorting:
- Cookiecutter for snakemake slurm profile☆132Updated last year
- A simple Snakemake profile for Slurm without --cluster-config☆161Updated last year
- NBIS/Elixir course: Tools for Reproducible Research☆64Updated last week
- A short tutorial on getting started with Snakemake for workflow management☆53Updated 6 years ago
- Config files used to define parameters specific to compute environments at different Institutions☆103Updated this week
- This is the development home of the Snakemake wrapper repository, see☆232Updated this week
- Demonstrating best practices for bioinformatics command line tools☆117Updated 4 years ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆88Updated 3 weeks ago
- Testing building mulled containers for multi-requirement tools.☆76Updated this week
- Documentation of the Snakemake-Workflows project☆154Updated 3 years ago
- The uncompromising Snakemake code formatter☆176Updated last month
- A proof of concept of RNAseq pipeline☆78Updated 2 months ago
- Snakemake profile for running jobs on an LSF cluster☆38Updated last year
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆106Updated 2 months ago
- Data Science Operations (dso) command line tool☆41Updated this week
- Turn an existing conda environment into a Singularity container☆81Updated 2 years ago
- Monitor computational workflows in real time☆74Updated last year
- Reference genome resource manager☆75Updated last year
- Example genomics data for tool developers☆116Updated last year
- Melbourne Bioinformatics documentation in markdown format☆118Updated 2 months ago
- machine-readable file format for genomic library sequence and structure☆121Updated this week
- A Github action for running a Snakemake workflow☆59Updated 2 months ago
- Module for embedding igv.js in an IPython notebook☆78Updated 6 months ago
- Simple test framework for Nextflow pipelines☆168Updated 2 months ago
- Example Nextflow pipelines and programming techniques☆107Updated 3 months ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆107Updated last week
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 3 months ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆81Updated 3 weeks ago
- Sequana: a set of Snakemake NGS pipelines☆146Updated last month
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆151Updated this week