Alternatives and similar repositories for snakemake-workflow-template:

Users that are interested in snakemake-workflow-template are comparing it to the libraries listed below

• Snakemake-Profiles / slurm
  Cookiecutter for snakemake slurm profile
  ☆132Updated last year
• deto / Snakemake_Tutorial
  A short tutorial on getting started with Snakemake for workflow management
  ☆51Updated 6 years ago
• jdblischak / smk-simple-slurm
  A simple Snakemake profile for Slurm without --cluster-config
  ☆154Updated 10 months ago
• NBISweden / workshop-reproducible-research
  NBIS/Elixir course: Tools for Reproducible Research
  ☆65Updated 2 weeks ago
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆36Updated 9 months ago
• snakemake-workflows / cookiecutter-snakemake-workflow
  A cookiecutter template for Snakemake workflows
  ☆59Updated 3 years ago
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆116Updated 4 years ago
• snakemake / snakefmt
  The uncompromising Snakemake code formatter
  ☆165Updated last month
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆85Updated 6 years ago
• sebepedroslab / GeneExt
  GeneExt - Gene extension for improved scRNA-seq data counting
  ☆13Updated 2 months ago
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆58Updated last month
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆62Updated last week
• mlbendall / telescope
  Quantification of transposable element expression using RNA-seq
  ☆69Updated last year
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆44Updated last month
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆44Updated last month
• mrvollger / SmkTemplate
  A template repository for snakemake workflows.
  ☆38Updated 5 months ago
• nf-core / demultiplex
  Demultiplexing pipeline for sequencing data
  ☆47Updated last week
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆78Updated 2 months ago
• ivanek / Gviz
  This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.
  ☆83Updated 3 months ago
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆111Updated 2 years ago
• Wytamma / snk
  Snakemake workflow management system and CLI generation tool
  ☆57Updated last week
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆80Updated 2 months ago
• snakemake-workflows / docs
  Documentation of the Snakemake-Workflows project
  ☆154Updated 3 years ago
• snakemake-workflows / rna-seq-kallisto-sleuth
  A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
  ☆68Updated last week
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆96Updated last year
• pachterlab / seqspec
  machine-readable file format for genomic library sequence and structure
  ☆120Updated last month
• quinlan-lab / sllobs-biostats
  ☆70Updated 3 years ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆72Updated this week
• snakemake-workflows / ngs-test-data
  A workflow for creating small NGS test data sets, useful for continuous integration.
  ☆22Updated 8 months ago
• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆21Updated 6 months ago