Alternatives and similar repositories for snakemake-workflow-template

Users that are interested in snakemake-workflow-template are comparing it to the libraries listed below

• Snakemake-Profiles / slurm
  Cookiecutter for snakemake slurm profile
  ☆132Updated last year
• NBISweden / workshop-reproducible-research
  NBIS/Elixir course: Tools for Reproducible Research
  ☆65Updated last month
• jdblischak / smk-simple-slurm
  A simple Snakemake profile for Slurm without --cluster-config
  ☆155Updated 11 months ago
• deto / Snakemake_Tutorial
  A short tutorial on getting started with Snakemake for workflow management
  ☆52Updated 6 years ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆73Updated this week
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆37Updated 10 months ago
• snakemake / snakefmt
  The uncompromising Snakemake code formatter
  ☆168Updated 2 months ago
• smithlabcode / falco
  A C++ drop-in replacement of FastQC to assess the quality of sequence read data
  ☆112Updated 6 months ago
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆83Updated last year
• mrvollger / SmkTemplate
  A template repository for snakemake workflows.
  ☆38Updated 6 months ago
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆117Updated 4 years ago
• snakemake-workflows / cookiecutter-snakemake-workflow
  A cookiecutter template for Snakemake workflows
  ☆59Updated 3 years ago
• refgenie / refgenie
  Reference genome resource manager
  ☆76Updated last year
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆43Updated 2 months ago
• smithlabcode / preseq
  Software for predicting library complexity and genome coverage in high-throughput sequencing.
  ☆83Updated 7 months ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆62Updated last month
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆99Updated this week
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆96Updated last year
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆102Updated 6 months ago
• Boehringer-Ingelheim / dso
  Data Science Operations (dso) command line tool
  ☆32Updated last month
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆113Updated 2 years ago
• pachterlab / seqspec
  machine-readable file format for genomic library sequence and structure
  ☆120Updated 2 months ago
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆75Updated 3 months ago
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆44Updated 2 months ago
• nextflow-io / nf-schema
  Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
  ☆41Updated 3 weeks ago
• mlbendall / telescope
  Quantification of transposable element expression using RNA-seq
  ☆70Updated last year
• crazyhottommy / oneliner_100day_challenge
  Bioinformatics one-liner for 100 days
  ☆47Updated last year
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆73Updated last year
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆58Updated last month
• mikelove / preNivolumabOnNivolumab
  EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
  ☆56Updated 2 years ago