Documentation of the Snakemake-Profiles project.
☆54Mar 15, 2022Updated 4 years ago
Alternatives and similar repositories for doc
Users that are interested in doc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cookiecutter for snakemake slurm profile☆136Apr 25, 2024Updated 2 years ago
- ☆17Oct 20, 2023Updated 3 years ago
- The uncompromising Snakemake code formatter☆196Updated this week
- Documentation of the Snakemake-Workflows project☆160Feb 2, 2022Updated 4 years ago
- A Github action for running a Snakemake workflow☆64Apr 24, 2026Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Library of snakemake rules.☆13Oct 2, 2018Updated 8 years ago
- command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig☆17May 2, 2020Updated 6 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Apr 19, 2018Updated 8 years ago
- Snakemake profile for the (Sun) Grid Engine queueing system☆17Jul 13, 2023Updated 3 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Feb 4, 2016Updated 10 years ago
- A cookiecutter template for Snakemake workflows☆59Feb 2, 2022Updated 4 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Aug 19, 2017Updated 9 years ago
- This is the development home of the Snakemake wrapper repository, see☆254Oct 23, 2026Updated last week
- SRA python tools☆11Jun 9, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Cromwell output organizer☆13May 18, 2021Updated 5 years ago
- Snakemake skeleton - Build workflows with Snakemake☆19May 17, 2024Updated 2 years ago
- An unbiased method for genome-wide CBE off-targets assessment☆14Mar 9, 2023Updated 3 years ago
- Monitor computational workflows in real time☆76Updated this week
- http://a-terada.github.com/lamp/☆14Jul 14, 2023Updated 3 years ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Apr 1, 2024Updated 2 years ago
- PredictDB Pipeline for GTEx v7 data☆18Nov 9, 2022Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Jun 13, 2023Updated 3 years ago
- Supporting code for the paper "Measuring evolutionary rates of proteins in a structural context"☆15Sep 10, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Language support and snippets for Snakemake workflows (Snakefile, *.smk) for Visual Studio Code and Apache Theia.☆25May 21, 2026Updated 5 months ago
- supplementary tables and files☆11Oct 13, 2023Updated 3 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Jul 5, 2019Updated 7 years ago
- R package to evaluate reproducibility of Hi-C data☆10Mar 16, 2023Updated 3 years ago
- Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.☆65Oct 16, 2026Updated 2 weeks ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 5 years ago
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 3 years ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆67Updated this week
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Feb 13, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A collection of Python clients and accessory scripts for interacting with the Cromwell☆23Nov 16, 2022Updated 3 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 5 years ago
- RNA-seq workflow using STAR and DESeq2☆373Oct 21, 2026Updated last week
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆23Sep 1, 2026Updated last month
- WDL plugin for pytest☆49Aug 1, 2023Updated 3 years ago
- Generate command line parser using getopt_long☆16Dec 11, 2024Updated last year
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Jun 28, 2018Updated 8 years ago