Snakemake-Profiles / docLinks
Documentation of the Snakemake-Profiles project.
☆55Updated 3 years ago
Alternatives and similar repositories for doc
Users that are interested in doc are comparing it to the libraries listed below
Sorting:
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago
- conda recipes for genomic data☆85Updated 4 years ago
- The command-line interface to GGD☆43Updated 2 years ago
- A cookiecutter template for Snakemake workflows☆59Updated 3 years ago
- Reference genome resource manager☆75Updated last year
- Response to blog post about Salmon☆37Updated 7 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆70Updated last year
- BigWig and BAM utilities☆97Updated last year
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆40Updated 4 years ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated 3 months ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆58Updated 7 years ago
- ☆38Updated 5 months ago
- Analysis from kallisto paper☆32Updated 9 years ago
- A Github action for running a Snakemake workflow☆59Updated last month
- Gene Fusion Visualiser☆51Updated 2 years ago
- A C library for handling bigWig files☆80Updated 6 months ago
- An automated RNA-seq pipeline using Nextflow☆37Updated 10 months ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆54Updated last year
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆122Updated 3 months ago
- Genomic data interpretation and visualization Workshop☆21Updated 2 weeks ago