Documentation of the Snakemake-Profiles project.
☆55Mar 15, 2022Updated 4 years ago
Alternatives and similar repositories for doc
Users that are interested in doc are comparing it to the libraries listed below
Sorting:
- Cookiecutter for snakemake slurm profile☆134Apr 25, 2024Updated last year
- ☆17Oct 20, 2023Updated 2 years ago
- The uncompromising Snakemake code formatter☆182Mar 13, 2026Updated last week
- A Github action for running a Snakemake workflow☆62Dec 15, 2025Updated 3 months ago
- Documentation of the Snakemake-Workflows project☆156Feb 2, 2022Updated 4 years ago
- Library of snakemake rules.☆12Oct 2, 2018Updated 7 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Feb 4, 2016Updated 10 years ago
- Ancient microbiome snakemake workflow☆27Apr 11, 2025Updated 11 months ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Apr 19, 2018Updated 7 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Aug 19, 2017Updated 8 years ago
- http://a-terada.github.com/lamp/☆14Jul 14, 2023Updated 2 years ago
- Cromwell output organizer☆13May 18, 2021Updated 4 years ago
- This is the development home of the Snakemake wrapper repository, see☆240Mar 13, 2026Updated last week
- SRA python tools☆11Jun 9, 2021Updated 4 years ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Apr 1, 2024Updated last year
- An unbiased method for genome-wide CBE off-targets assessment☆13Mar 9, 2023Updated 3 years ago
- Monitor computational workflows in real time☆74May 23, 2024Updated last year
- A cookiecutter template for Snakemake workflows☆60Feb 2, 2022Updated 4 years ago
- PredictDB Pipeline for GTEx v7 data☆18Nov 9, 2022Updated 3 years ago
- Snakemake profile for the (Sun) Grid Engine queueing system☆17Jul 13, 2023Updated 2 years ago
- Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.☆62Aug 14, 2025Updated 7 months ago
- supplementary tables and files☆10Oct 13, 2023Updated 2 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Jul 5, 2019Updated 6 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Jun 13, 2023Updated 2 years ago
- Supporting code for the paper "Measuring evolutionary rates of proteins in a structural context"☆15Sep 10, 2018Updated 7 years ago
- R package to evaluate reproducibility of Hi-C data☆10Mar 16, 2023Updated 3 years ago
- TFFM framework☆13Sep 22, 2025Updated 5 months ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 2 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21May 11, 2023Updated 2 years ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆63Oct 19, 2025Updated 5 months ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Jan 6, 2021Updated 5 years ago
- WDL plugin for pytest☆48Aug 1, 2023Updated 2 years ago
- Generate command line parser using getopt_long☆16Dec 11, 2024Updated last year
- RNA-Seq normalization and quantification pipeline☆12Nov 25, 2024Updated last year
- Validate and submit reads using Webin-CLI in batch.☆11Aug 3, 2023Updated 2 years ago
- Generic methods, types and modules for the BioJulia ecosystem.☆12Jul 11, 2024Updated last year
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago