Alternatives and similar repositories for snakemake-github-action:

Users that are interested in snakemake-github-action are comparing it to the libraries listed below

• nextflow-io / vscode-language-nextflow
  Nextflow language support for Visual Studio Editor
  ☆34Updated this week
• grst / nxfvars
  Access nextflow variables from python scripts or notebooks
  ☆21Updated 3 years ago
• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆21Updated 4 months ago
• nh13 / snakeparse
  Making Snakemake workflows into full-fledged command line tools since 1999.
  ☆51Updated 6 years ago
• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆35Updated last year
• snakemake-workflows / snakemake-workflow-template
  A template for standard compliant snakemake-workflows
  ☆92Updated last year
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆71Updated this week
• Wytamma / snk
  Snakemake workflow management system and CLI generation tool
  ☆53Updated last month
• snakemake-workflows / cookiecutter-snakemake-workflow
  A cookiecutter template for Snakemake workflows
  ☆57Updated 3 years ago
• seqeralabs / seqera-kit
  Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)
  ☆28Updated last week
• biocorecrg / BioNextflow
  A collection of modules and sub-workflows for Nextflow
  ☆26Updated this week
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆49Updated 7 months ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆42Updated last year
• refgenie / refgenie
  Reference genome resource manager
  ☆75Updated last year
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆36Updated 7 months ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆25Updated this week
• Snakemake-Profiles / doc
  Documentation of the Snakemake-Profiles project.
  ☆52Updated 3 years ago
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆58Updated last week
• snakemake-workflows / ngs-test-data
  A workflow for creating small NGS test data sets, useful for continuous integration.
  ☆21Updated 7 months ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆61Updated this week
• openwdl / workflow-template-wdl
  ☆9Updated 5 months ago
• snakemake / snakemake-workflow-catalog
  A statically generated catalog of available Snakemake workflows
  ☆32Updated this week
• bionitio-team / bionitio-python
  Demonstrating best practices for bioinformatics command line tools
  ☆26Updated 4 years ago
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆36Updated last year
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated this week
• broadinstitute / fiss
  FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine
  ☆31Updated this week
• ctb / 2019-snakemake-ucdavis
  Intro to workflows for efficient automated data analysis, using snakemake.
  ☆32Updated 5 years ago
• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆23Updated last week
• brentp / cigar
  simple library for dealing with SAM cigar strings
  ☆40Updated 4 years ago
• Gaius-Augustus / MakeHub
  Fully automated generation of UCSC assembly hubs
  ☆34Updated 5 months ago