A Github action for running a Snakemake workflow
☆63Apr 24, 2026Updated 4 months ago
Alternatives and similar repositories for snakemake-github-action
Users that are interested in snakemake-github-action are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The uncompromising Snakemake code formatter☆195Aug 18, 2026Updated last week
- deploy a snakemake pipeline directly from version control (under development)☆27Jun 18, 2026Updated 2 months ago
- This is the development home of the Snakemake wrapper repository, see☆255Updated this week
- Pipeline for automatic processing and quality control of mass spectrometry data☆14Aug 14, 2026Updated 2 weeks ago
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆91Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Documentation of the Snakemake-Profiles project.☆55Mar 15, 2022Updated 4 years ago
- A simple Snakemake profile for Slurm without --cluster-config☆167Jun 20, 2024Updated 2 years ago
- Template for building a small workflow in Nextflow☆17May 2, 2022Updated 4 years ago
- This project contains simple methods to measure sample relatedness and identify potential swaps and contamination☆10Jan 8, 2016Updated 10 years ago
- A workflow for creating small NGS test data sets, useful for continuous integration.☆23Aug 15, 2024Updated 2 years ago
- A statically generated catalog of available Snakemake workflows☆37Updated this week
- Documentation of the Snakemake-Workflows project☆160Feb 2, 2022Updated 4 years ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 5 months ago
- A template for standard compliant snakemake-workflows☆137Mar 27, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A set of command line utilities based on Rust-Bio.☆205Jun 24, 2024Updated 2 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- This is the development home of the workflow management system Snakemake. For general information, see☆2,853Updated this week
- GitHub action to setup apptainer☆17Jan 7, 2025Updated last year
- This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.☆20Oct 15, 2018Updated 7 years ago
- RNA-seq workflow using STAR and DESeq2☆370Dec 18, 2025Updated 8 months ago
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 4 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Listing of GPU based bioinformatics software & sites & publications☆12Jan 16, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Aug 10, 2026Updated 2 weeks ago
- Snakemake with pytest example☆11Jul 18, 2020Updated 6 years ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆16May 24, 2023Updated 3 years ago
- ggplot2 geoms to outline groups of data points☆16Nov 24, 2023Updated 2 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆69Aug 17, 2026Updated last week
- An awesome tool to visualize snakemake rule graphs☆39May 2, 2026Updated 3 months ago
- vembrane filters, sorts, and transforms VCF records using python expressions☆70Updated this week
- Customizable workflows based on snakemake and python for the analysis of NGS data☆407Aug 14, 2026Updated 2 weeks ago
- modular k-mer count matrix and Bloom filter construction for large read collections☆89Jun 26, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 9 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆267Jun 8, 2023Updated 3 years ago
- Repel Visually Similar Colors for Colorblind Users (CRAN)☆11Aug 22, 2026Updated last week
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 3 months ago
- R package for gene selection using k-NN graphs.☆15Jun 12, 2023Updated 3 years ago
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆13Mar 18, 2024Updated 2 years ago
- ☆18Jul 9, 2018Updated 8 years ago