snakemake / snakemake-github-actionLinks
A Github action for running a Snakemake workflow
☆59Updated last month
Alternatives and similar repositories for snakemake-github-action
Users that are interested in snakemake-github-action are comparing it to the libraries listed below
Sorting:
- Access nextflow variables from python scripts or notebooks☆21Updated 4 years ago
- This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…☆34Updated 3 years ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆39Updated last year
- deploy a snakemake pipeline directly from version control (under development)☆24Updated 4 months ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆43Updated last year
- Nextflow language support for Visual Studio Editor☆34Updated this week
- Testing building mulled containers for multi-requirement tools.☆76Updated this week
- Documentation of the Snakemake-Profiles project.☆55Updated 3 years ago
- A workflow for creating small NGS test data sets, useful for continuous integration.☆22Updated 11 months ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago
- Monitor computational workflows in real time☆74Updated last year
- Fast FASTQ sample demultiplexing in Rust.☆63Updated last month
- Params validation plugin for Nextflow pipelines☆48Updated 11 months ago
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆30Updated last month
- ☆30Updated 2 months ago
- Fast sequencing data quality metrics☆26Updated last month
- Snakemake profile for running jobs on an LSF cluster☆38Updated 11 months ago
- vembrane filters VCF records using python expressions☆61Updated this week
- Reference genome resource manager☆76Updated last year
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated 8 months ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 4 years ago
- Efficiently read and write sequencing data from Python☆64Updated last month
- A template for standard compliant snakemake-workflows☆104Updated 3 weeks ago
- a minimal, scriptable genome browser for python☆51Updated 6 months ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆45Updated last year
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆86Updated last week
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated 2 months ago
- BigWig and BAM utilities☆96Updated last year