A Github action for running a Snakemake workflow
☆62Dec 15, 2025Updated 2 months ago
Alternatives and similar repositories for snakemake-github-action
Users that are interested in snakemake-github-action are comparing it to the libraries listed below
Sorting:
- The uncompromising Snakemake code formatter☆182Feb 9, 2026Updated 2 weeks ago
- deploy a snakemake pipeline directly from version control (under development)☆25Updated this week
- Documentation of the Snakemake-Profiles project.☆55Mar 15, 2022Updated 3 years ago
- This is the development home of the Snakemake wrapper repository, see☆239Updated this week
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆88Updated this week
- This project contains simple methods to measure sample relatedness and identify potential swaps and contamination☆10Jan 8, 2016Updated 10 years ago
- A simple Snakemake profile for Slurm without --cluster-config☆165Jun 20, 2024Updated last year
- Documentation of the Snakemake-Workflows project☆156Feb 2, 2022Updated 4 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- Reproducible GSEA Benchmarking☆14Oct 30, 2025Updated 4 months ago
- A workflow for creating small NGS test data sets, useful for continuous integration.☆24Aug 15, 2024Updated last year
- A statically generated catalog of available Snakemake workflows☆37Updated this week
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- Template for building a small workflow in Nextflow☆17May 2, 2022Updated 3 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated this week
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- This is the development home of the workflow management system Snakemake. For general information, see☆2,713Updated this week
- DSL for dynamic programming☆17Dec 11, 2019Updated 6 years ago
- GitHub action to setup apptainer☆17Jan 7, 2025Updated last year
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R