Alternatives and similar repositories for snakemake-github-action

Users that are interested in snakemake-github-action are comparing it to the libraries listed below

• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆24Updated last week
• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆41Updated 2 years ago
• ncbi / JUDI
  This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…
  ☆33Updated 3 years ago
• grst / nxfvars
  Access nextflow variables from python scripts or notebooks
  ☆20Updated 4 years ago
• nextflow-io / nf-prov
  Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…
  ☆30Updated last month
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆38Updated last year
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated last year
• nextflow-io / vscode-language-nextflow
  Nextflow language support for Visual Studio Editor
  ☆35Updated this week
• seqeralabs / tower-cli
  Nextflow Tower CLI tool
  ☆50Updated this week
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆73Updated last year
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆99Updated last year
• snakemake-workflows / dna-seq-varlociraptor
  A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …
  ☆86Updated this week
• nh13 / snakeparse
  Making Snakemake workflows into full-fledged command line tools since 1999.
  ☆51Updated 7 years ago
• refgenie / refgenie
  Reference genome resource manager
  ☆74Updated 2 years ago
• seqeralabs / seqerakit
  Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)
  ☆32Updated last week
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆68Updated last month
• Snakemake-Profiles / doc
  Documentation of the Snakemake-Profiles project.
  ☆54Updated 3 years ago
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆43Updated 3 years ago
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆66Updated 2 months ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆80Updated 2 weeks ago
• dpryan79 / libBigWig
  A C library for handling bigWig files
  ☆81Updated 10 months ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆31Updated 2 months ago
• nf-core / tower-action
  GitHub Action to launch a workflow using Nextflow Tower.
  ☆12Updated 2 years ago
• snakemake-workflows / snakemake-workflow-template
  A template for standard compliant snakemake-workflows
  ☆117Updated last month
• Wytamma / snk
  Snakemake workflow management system and CLI generation tool
  ☆63Updated last month
• LukeGoodsell / nextflow-vim
  Nextflow plugin for VIM
  ☆50Updated 2 years ago
• nextflow-io / nf-schema
  Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
  ☆45Updated this week
• biocorecrg / BioNextflow
  A collection of modules and sub-workflows for Nextflow
  ☆28Updated last month
• dancooke / starfish
  Intersect multiple VCF files with haplotype awareness
  ☆25Updated 4 years ago
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆116Updated 5 years ago