snakemake / snakemake-github-actionLinks
A Github action for running a Snakemake workflow
☆58Updated last week
Alternatives and similar repositories for snakemake-github-action
Users that are interested in snakemake-github-action are comparing it to the libraries listed below
Sorting:
- Testing building mulled containers for multi-requirement tools.☆75Updated this week
- Reference genome resource manager☆76Updated last year
- The Zavolab Automated RNA-seq Pipeline☆35Updated last month
- deploy a snakemake pipeline directly from version control (under development)☆24Updated 3 months ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago
- ☆30Updated last month
- Snakemake profile for running jobs on an LSF cluster☆38Updated 10 months ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆38Updated last year
- Nextflow language support for Visual Studio Editor☆34Updated last week
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆43Updated last year
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last week
- Access nextflow variables from python scripts or notebooks☆21Updated 4 years ago
- Introduction to Snakemake for Bioinformatics☆19Updated this week
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- A template for standard compliant snakemake-workflows☆101Updated last week
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- A collection of modules and sub-workflows for Nextflow☆26Updated 3 weeks ago
- Test data for MultiQC.☆22Updated 2 weeks ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆97Updated 6 months ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 4 years ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated 7 months ago
- Bioinformatics curated workflows that use Biocontainers tools☆19Updated 6 years ago
- A workflow for creating small NGS test data sets, useful for continuous integration.☆22Updated 10 months ago
- Fast FASTQ sample demultiplexing in Rust.☆62Updated 3 weeks ago
- a minimal, scriptable genome browser for python☆51Updated 6 months ago
- Params validation plugin for Nextflow pipelines☆48Updated 10 months ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated 2 years ago
- ☆12Updated 6 years ago
- Fast sequencing data quality metrics☆26Updated 3 weeks ago