snakemake-workflows / dna-seq-benchmark
A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets
☆12Updated 2 weeks ago
Alternatives and similar repositories for dna-seq-benchmark:
Users that are interested in dna-seq-benchmark are comparing it to the libraries listed below
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆26Updated this week
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Fast sequencing data quality metrics☆26Updated this week
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆22Updated this week
- ☆39Updated 6 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Short Tandem Repeat disease loci resource☆14Updated 2 weeks ago
- ☆23Updated 5 years ago
- Location of public benchmarking; primarily final results☆18Updated last month
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Adapters for trimming☆30Updated 6 years ago
- Highly Open Workflow for Annotation & Ranking toward genomic variant Discovery☆10Updated this week
- ☆22Updated last year
- A bioinformatics pipeline to phase and impute genetic data☆19Updated 3 weeks ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 6 months ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Structural variant (SV) analysis tools☆35Updated 8 months ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated last week
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- ☆13Updated 2 months ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated last year
- Population-wide Deletion Calling☆35Updated 6 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆28Updated 8 months ago
- Params validation plugin for Nextflow pipelines☆49Updated 7 months ago
- Immuological gene typing and annotation for genome assembly☆35Updated 2 weeks ago
- ☆29Updated 2 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 4 months ago
- ☆20Updated last year
- Master of Pores 2☆23Updated 3 months ago