snakemake-workflows / dna-seq-benchmarkLinks
A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets
☆12Updated this week
Alternatives and similar repositories for dna-seq-benchmark
Users that are interested in dna-seq-benchmark are comparing it to the libraries listed below
Sorting:
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated 2 years ago
- ☆41Updated 9 months ago
- Highly Open Workflow for Annotation & Ranking toward genomic variant Discovery☆10Updated this week
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆32Updated this week
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆20Updated 2 weeks ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 7 months ago
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last week
- ☆13Updated 3 years ago
- Location of public benchmarking; primarily final results☆18Updated 4 months ago
- Model files for Sentieon variant callers☆16Updated last month
- Immuological gene typing and annotation for genome assembly☆37Updated 3 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 4 months ago
- A Nextflow pipeline to play Doom☆10Updated 5 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 11 months ago
- Short Tandem Repeat disease loci resource☆18Updated last week
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Fast sequencing data quality metrics☆26Updated 3 weeks ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- ☆30Updated 2 years ago
- A bioinformatics pipeline to phase and impute genetic data☆22Updated last week
- vembrane filters VCF records using python expressions☆60Updated this week
- ☆19Updated 2 months ago