snakemake-workflows / dna-seq-benchmarkLinks
A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets
☆12Updated this week
Alternatives and similar repositories for dna-seq-benchmark
Users that are interested in dna-seq-benchmark are comparing it to the libraries listed below
Sorting:
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆43Updated 10 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- Structural Variant Index☆75Updated 7 months ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆34Updated last week
- Highly Open Workflow for Annotation & Ranking toward genomic variant Discovery☆11Updated 3 weeks ago
- Mapped QC analysis program☆44Updated 7 years ago
- A bioinformatics pipeline to phase and impute genetic data☆23Updated last month
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Evolutionary Transcriptomics with R☆45Updated this week
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆32Updated last week
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- Fast sequencing data quality metrics☆27Updated 2 months ago
- vembrane filters VCF records using python expressions☆61Updated this week
- (WIP) best-practices workflow for rare disease☆60Updated last year
- POSTRE: Prediction Of STRuctural variant Effects☆27Updated 5 months ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆44Updated this week
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 5 months ago
- ☆39Updated last year
- v2.x of the microassembly based somatic variant caller☆24Updated 3 weeks ago
- Algorithm to detect germline and de novo transposon insertions☆29Updated 3 months ago